RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 GRM3Q14832 879 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 DBN1Q16643 649 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 CFAP157Q5JU67 520 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 FRMD7Q6ZUT3 714 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 TAC4Q86UU9 113 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 NTAN1Q96AB6 310 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 ZNF419Q96HQ0 510 aaPredicted RBP13.14□□□□□ -0.31
HIF3A-204ENST00000300862 OR52B2Q96RD2 323 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 WDR55Q9H6Y2 383 aaPredicted RBP13.14□□□□□ -0.31
HIF3A-204ENST00000300862 NMRAL1Q9HBL8 299 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 CNGB3Q9NQW8 809 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 SLC45A1Q9Y2W3 748 aa13.14□□□□□ -0.31
HIF3A-204ENST00000300862 HHLA1C9JL84 531 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 FBXO21O94952 628 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 MAGEA12P43365 314 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TSC2P49815 1807 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 GALNT2Q10471 571 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SCAPQ12770 1279 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 CUL3Q13618 768 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 ZNF460Q14592 562 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 ARL13BQ3SXY8 428 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 CCDC153Q494R4 210 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TCHHL1Q5QJ38 904 aaPredicted RBP13.13□□□□□ -0.31
HIF3A-204ENST00000300862 IZUMO2Q6UXV1 221 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 DEFB107AQ8IZN7 70 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SCAMP5Q8TAC9 235 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 GATA5Q9BWX5 397 aaPredicted RBP13.13□□□□□ -0.31
HIF3A-204ENST00000300862 C1orf21Q9H246 121 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 DNAJC28Q9NX36 388 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 NDE1Q9NXR1 346 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 ANGPTL2Q9UKU9 493 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 ST3GAL5Q9UNP4 418 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 PCDHB12Q9Y5F1 795 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TTC3P53804 2025 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 MYADML2A6NDP7 307 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 THP07101 528 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 LYNP07948 512 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 MPSTP25325 297 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 POU6F1Q14863 301 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TIGD5Q53EQ6 642 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 HPS6Q86YV9 775 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 OR6Y1Q8NGX8 325 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SLC26A7Q8TE54 656 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 MYLPFQ96A32 169 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 HDAC11Q96DB2 347 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TEKT5Q96M29 485 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 EPAS1Q99814 870 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SIKE1Q9BRV8 207 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 TASP1Q9H6P5 420 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 FAM105AQ9NUU6 356 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 NUDT5Q9UKK9 219 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SORCS3Q9UPU3 1222 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 CDY2AQ9Y6F7 541 aa13.13□□□□□ -0.31
HIF3A-204ENST00000300862 SERPINB5P36952 375 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 AP2B1P63010 937 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 MAP2K5Q13163 448 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 LAMB3Q13751 1172 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ZRSR2Q15696 482 aaKnown RBP13.12□□□□□ -0.31
HIF3A-204ENST00000300862 PDCD2Q16342 344 aaPredicted RBP13.12□□□□□ -0.31
HIF3A-204ENST00000300862 GSTA3Q16772 222 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 RAB41Q5JT25 222 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 RNF111Q6ZNA4 994 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 TDRD5Q8NAT2 981 aaKnown RBP13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ZSCAN18Q8TBC5 510 aaPredicted RBP13.12□□□□□ -0.31
HIF3A-204ENST00000300862 TMEM209Q96SK2 561 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 SYT17Q9BSW7 474 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 AP5M1Q9H0R1 490 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 CDH19Q9H159 772 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ATXN3LQ9H3M9 355 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 SPON1Q9HCB6 807 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 TMLHEQ9NVH6 421 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 PDP2Q9P2J9 529 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ADAM28Q9UKQ2 775 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ARL5CA6NH57 179 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ZCCHC18P0CG32 403 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 ITGAXP20702 1163 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 BRCC3P46736 316 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 LHX1P48742 406 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 PGFP49763 221 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 CPT1AP50416 773 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 CTBP1Q13363 440 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 EML3Q32P44 896 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 CLEC14AQ86T13 490 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 DENND6AQ8IWF6 608 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 PNPLA1Q8N8W4 532 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 IPMKQ8NFU5 416 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 KCTD4Q8WVF5 259 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 SCYL1Q96KG9 808 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 TUBGCP5Q96RT8 1024 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 RTP3Q9BQQ7 232 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 FTHL17Q9BXU8 183 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 FAM192AQ9GZU8 254 aa13.12□□□□□ -0.31
HIF3A-204ENST00000300862 STN1Q9H668 368 aaKnown RBP13.12□□□□□ -0.31
HIF3A-204ENST00000300862 C9IYK1 514 aa13.11□□□□□ -0.31
HIF3A-204ENST00000300862 NCAM2O15394 837 aa13.11□□□□□ -0.31
HIF3A-204ENST00000300862 TRIM13O60858 407 aa13.11□□□□□ -0.31
HIF3A-204ENST00000300862 POMCP01189 267 aa13.11□□□□□ -0.31
HIF3A-204ENST00000300862 ATP5BP06576 529 aaKnown RBP13.11□□□□□ -0.31
HIF3A-204ENST00000300862 ALOX15P16050 662 aaPredicted RBP13.11□□□□□ -0.31
HIF3A-204ENST00000300862 GABRB3P28472 473 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms