RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GDI2P50395 445 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 SLC26A2P50443 739 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 PPP3CAQ08209 521 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 STX4Q12846 297 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 TOP3AQ13472 1001 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 USP41Q3LFD5 358 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 FBXO42Q6P3S6 717 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 HACD2Q6Y1H2 254 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 MACC1Q6ZN28 852 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 ZNF467Q7Z7K2 595 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 EDARQ9UNE0 448 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 SNX13Q9Y5W8 968 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 C2orf71A6NGG8 1288 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 APOL1O14791 398 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 SNAP91O60641 907 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 MAFKO60675 156 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 FAM20BO75063 409 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CNOT3O75175 753 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 TRMUO75648 421 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 MMP10P09238 476 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 RAD23AP54725 363 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 AQP5P55064 265 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 TSNQ15631 228 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 DGUOKQ16854 277 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 C15orf59Q2T9L4 293 aaPredicted RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 NDUFAF6Q330K2 333 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 CDC73Q6P1J9 531 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 NSMFQ6X4W1 530 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 NSUN6Q8TEA1 469 aaKnown RBP6.51□□□□□ -1.37
VPS35-201ENST00000299138 TSPAN17Q96FV3 270 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 KLHL11Q9NVR0 708 aa6.51□□□□□ -1.37
VPS35-201ENST00000299138 UBA6A0AVT1 1052 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 SDR42E2A6NKP2 422 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CST8O60676 142 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZNF432O94892 652 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 DLDP09622 509 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 IFI30P13284 250 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PGAM1P18669 254 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 GLRA2P23416 452 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ETV4P43268 484 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 DEFA5Q01523 94 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 BST1Q10588 318 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MTMR1Q13613 665 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PDK1Q15118 436 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PCBP1Q15365 356 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS35-201ENST00000299138 CARTPTQ16568 116 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TAZQ16635 292 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PIWIL4Q7Z3Z4 852 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 ERO1BQ86YB8 467 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PGAM4Q8N0Y7 254 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 LRRC71Q8N4P6 559 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 C10orf53Q8N6V4 93 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 VMP1Q96GC9 406 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MASTLQ96GX5 879 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CEP170P1Q96L14 293 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 RDH12Q96NR8 316 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PLEKHG4BQ96PX9 1271 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 FAM111AQ96PZ2 611 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 HBS1LQ9Y450 684 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 DPYSL4O14531 572 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 STAU1O95793 577 aaKnown RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 POLBP06746 335 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 VDRP11473 427 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CHRNB2P17787 502 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PTPN6P29350 595 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 SOAT1P35610 550 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 NOMO1Q15155 1222 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PPP1R15BQ5SWA1 713 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TMEM270Q6UE05 265 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 LINC00523Q86TU6 105 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 AKAP14Q86UN6 197 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 LRRC15Q8TF66 581 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PCDHB18PQ96TA0 734 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CPNE1Q99829 537 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 C1orf50Q9BV19 199 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 MARCH7Q9H992 704 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 NDFIP2Q9NV92 336 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ANKRD36CQ5JPF3 1778 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ROBO1Q9Y6N7 1651 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 TRIM38O00635 465 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 LGR5O75473 907 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CABYRO75952 493 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 SERPINA3P01011 423 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 RPA3P35244 121 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 ALDH1A3P47895 512 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 IL5RAQ01344 420 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS35-201ENST00000299138 CBX3Q13185 183 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 POLD3Q15054 466 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 DOK7Q18PE1 504 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 CNPY1Q3B7I2 92 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 SPANXN3Q5MJ09 141 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 OGFRL1Q5TC84 451 aaPredicted RBP6.5□□□□□ -1.37
VPS35-201ENST00000299138 ZBTB46Q86UZ6 589 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 PDSS2Q86YH6 399 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 ANKMY2Q8IV38 441 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 DPP10Q8N608 796 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 OSCP1Q8WVF1 389 aa6.5□□□□□ -1.37
VPS35-201ENST00000299138 FAM151AQ8WW52 585 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms