RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ACDQ96AP0 544 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 PCDHB18PQ96TA0 734 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 MRPL1Q9BYD6 325 aaKnown RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 TAS2R14Q9NYV8 317 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 KANSL1LA0AUZ9 987 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 CCDC189A1A4V9 331 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 KCNU1A8MYU2 1149 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 MAP3K13O43283 966 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 DYRK3O43781 588 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 CST3P01034 146 aaPredicted RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 KRT6AP02538 564 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 KRT6BP04259 564 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 RBL1P28749 1068 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 RXRGP48443 463 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 KRT6CP48668 564 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 HSP90AA5PQ58FG0 334 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 PAGE2BQ5JRK9 111 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 KIAA0408Q6ZU52 694 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 AVL9Q8NBF6 648 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 ATXN2LQ8WWM7 1075 aaKnown RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 CPXM1Q96SM3 734 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 BBS2Q9BXC9 721 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 RAD21L1Q9H4I0 556 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 GLOD4Q9HC38 313 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 TMEM114B3SHH9 223 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 E9PAM4 449 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 DDX3YO15523 660 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 HOXD8P13378 290 aaPredicted RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 LPOP22079 712 aaPredicted RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 PPP2R2DQ66LE6 453 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 PRMT9Q6P2P2 845 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 LVRNQ6Q4G3 990 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SLCO2A1Q92959 643 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 APOBEC3GQ9HC16 384 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 DEC1Q9P2X7 70 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 DNAJB1P25685 340 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 GJA5P36382 358 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SETMARQ53H47 684 aaPredicted RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 FBXO25Q8TCJ0 367 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 CSPG4P5Q96PW8 444 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 GBA3Q9H227 469 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 TLR9Q9NR96 1032 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 CFAP97Q9P2B7 532 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SPAG7O75391 227 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 RGS20O76081 388 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 DDHD2O94830 711 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 RPL3P39023 403 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 RPL21P46778 160 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 CDK18Q07002 472 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 C15orf59Q2T9L4 293 aaPredicted RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 MAB21L3Q8N8X9 362 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 GPAMQ9HCL2 828 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SORCS3Q9UPU3 1222 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 TBC1D3BA6NDS4 549 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SYF2O95926 243 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 IQCF3P0C7M6 154 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 HNRNPDQ14103 355 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 OTOP3Q7RTS5 596 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 CELF5Q8N6W0 485 aaKnown RBP13.87□□□□□ -0.19
LDLR-201ENST00000252444 ZNF333Q96JL9 665 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 SLC25A51Q9H1U9 297 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 YIPF1Q9Y548 306 aa13.87□□□□□ -0.19
LDLR-201ENST00000252444 MATN3O15232 486 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 CATP04040 527 aaKnown RBP13.86□□□□□ -0.19
LDLR-201ENST00000252444 CORO1AP31146 461 aaKnown RBP13.86□□□□□ -0.19
LDLR-201ENST00000252444 TRIM60Q495X7 471 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 RIN3Q8TB24 985 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 NECTIN4Q96NY8 510 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 OSBPL1AQ9BXW6 950 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 B3GNT5Q9BYG0 378 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TIMP1P01033 207 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 GPD2P43304 727 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TP53BP2Q13625 1128 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 DDR2Q16832 855 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TEX44Q53QW1 395 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 DUPD1Q68J44 220 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 MYO19Q96H55 970 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 SHDQ96IW2 340 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 NINJ2Q9NZG7 142 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 POLG2Q9UHN1 485 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 ENPP3O14638 875 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TSPAN3O60637 253 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 SERPINE1P05121 402 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 C8AP07357 584 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 ELK3P41970 407 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 PNLIPRP1P54315 467 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 KCNK10P57789 538 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 RING1Q06587 406 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 SLC39A4Q6P5W5 647 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TFAP2DQ7Z6R9 452 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 LRRC57Q8N9N7 239 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 OR56A4Q8NGH8 313 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 DTNBP1Q96EV8 351 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 IGSF9Q9P2J2 1179 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 BAIAP2L1Q9UHR4 511 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 FIS1Q9Y3D6 152 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 LOXHD1Q8IVV2 1947 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 DDX60LQ5H9U9 1706 aaKnown RBP13.86□□□□□ -0.19
LDLR-201ENST00000252444 PECAM1P16284 738 aaPredicted RBP13.86□□□□□ -0.19
LDLR-201ENST00000252444 PEX5P50542 639 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms