RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 RIBC2Q9H4K1 309 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 PDE10AQ9Y233 779 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 RAP2CQ9Y3L5 183 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 METP08581 1390 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 ADGRA2Q96PE1 1338 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 FAM189A1O60320 539 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 PIAS1O75925 651 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 NPR3P17342 541 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 NFATC3Q12968 1075 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 DCAF12L1Q5VU92 463 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 BICRALQ6AI39 1079 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 MFSD7Q6UXD7 560 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 GPD1LQ8N335 351 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 PARP8Q8N3A8 854 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 TSPAN17Q96FV3 270 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 EBF4Q9BQW3 602 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 FAM213AQ9BRX8 229 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 RUSC1Q9BVN2 902 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 CCDC106Q9BWC9 280 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 CPQQ9Y646 472 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 SLC22A2O15244 555 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 SLC16A4O15374 487 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 PAPSS1O43252 624 aaPredicted RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 CSDE1O75534 798 aaKnown RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 ATG7O95352 703 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF806P0C7X5 589 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 BMXP51813 675 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 TAGLNQ01995 201 aaKnown RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 FSTL1Q12841 308 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 COLEC12Q5KU26 742 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 NLRX1Q86UT6 975 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 C10orf107Q8IVU9 208 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 FAM9CQ8IZT9 166 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 MPP5Q8N3R9 675 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 NXF1Q9UBU9 619 aaKnown RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 TEX51A0A1B0GUA7 166 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 AP1G1O43747 822 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 IFNA7P01567 189 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 HADHAP40939 763 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 HADHBP55084 474 aaKnown RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 CCDC157Q569K6 752 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 POLE4Q9NR33 117 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 MAP3K20Q9NYL2 800 aaKnown RBP13.06□□□□□ -0.32
VAMP4-201ENST00000236192 ABCG2Q9UNQ0 655 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 COG5Q9UP83 839 aa13.06□□□□□ -0.32
VAMP4-201ENST00000236192 FADS2P1A8MWK0 482 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 TBX3O15119 743 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ALAS1P13196 640 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MSH3P20585 1137 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SDC4P31431 198 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SNRNP35Q16560 246 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FAM83EQ2M2I3 478 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 PYDC2Q56P42 97 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 DENND1BQ6P3S1 775 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF773Q6PK81 442 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SCARA5Q6ZMJ2 495 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 AMIGO1Q86WK6 493 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MSANTD3Q96H12 275 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 UNC93B1Q9H1C4 597 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 XPNPEP3Q9NQH7 507 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 RGS17Q9UGC6 210 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MKLN1Q9UL63 735 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 TMEM94Q12767 1356 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ZC3H13Q5T200 1668 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 H0YIN7 160 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 H3BMQ9 156 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 CHADO15335 359 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FUCA1P04066 466 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MYCLP12524 364 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 YWHABP31946 246 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MPP1Q00013 466 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 LGALS3BPQ08380 585 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SLFN12LQ6IEE8 588 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 BRSK2Q8IWQ3 736 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF669Q96BR6 464 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 COG8Q96MW5 612 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 CNOT6Q9ULM6 557 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 NR2E3Q9Y5X4 410 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 S100A6P06703 90 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ETV3P41162 512 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ITGA1P56199 1179 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SF3B4Q15427 424 aaKnown RBP eCLIP13.05□□□□□ -0.323e-6■■■□□ 15.4
VAMP4-201ENST00000236192 RBBP7Q16576 425 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 DNAJC14Q6Y2X3 702 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 STRA8Q7Z7C7 330 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FAM109AQ8N4B1 249 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 CLIP3Q96DZ5 547 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 KAT8Q9H7Z6 458 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 HTRA2O43464 458 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 APOL3O95236 402 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FKBP9O95302 570 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 IL7P13232 177 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 EPHA3P29320 983 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 IKBKEQ14164 716 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FASTKD3Q14CZ7 662 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 TRIP4Q15650 581 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 FXNQ16595 210 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms