RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 STK4Q13043 487 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 MFSD7Q6UXD7 560 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 DET1Q7L5Y6 550 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 TMC8Q8IU68 726 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 ULK2Q8IYT8 1036 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 OPTCQ9UBM4 332 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 DUSP12Q9UNI6 340 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.23□□□□□ -1.41
SCN1A-217ENST00000637988 NWD1Q149M9 1564 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 BCLAF3A2AJT9 711 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MOXD2PA6NHM9 499 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SNAP23O00161 211 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 XPO1O14980 1071 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 TLX3O43711 291 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MICAL2O94851 1124 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SMIM10L2AP0DMW4 78 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SMIM10L2BP0DMW5 78 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ZBTB48P10074 688 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CRABP2P29373 138 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RPL4P36578 427 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PGM5Q15124 567 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CRY1Q16526 586 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ARMCX4Q5H9R4 360 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FKBP1CQ5VVH2 108 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 GALNT13Q8IUC8 556 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RIOX2Q8IUF8 465 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SLC9A7Q96T83 725 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 EBNA1BP2Q99848 306 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ASB7Q9H672 318 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CERS4Q9HA82 394 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 KLHL1Q9NR64 748 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NCKIPSDQ9NZQ3 722 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SLC9A8Q9Y2E8 581 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NEXMIFQ5QGS0 1516 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 E2F8A0AVK6 867 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NCK2O43639 380 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NOL4O94818 638 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MATN4O95460 622 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ITGA7Q13683 1181 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ZC2HC1CQ53FD0 456 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PRMT9Q6P2P2 845 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 STRA8Q7Z7C7 330 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 OR56A4Q8NGH8 313 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ACE2Q9BYF1 805 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 HDHD2Q9H0R4 259 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ZFP14Q9HCL3 533 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MORC2Q9Y6X9 1032 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 V9GYQ6 96 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 H3BN98 237 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 KLK3P07288 261 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FGFR4P22455 802 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CYP2C18P33260 490 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RAP1GAPP47736 663 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FLT3LGP49771 235 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 DGKEP52429 567 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 BDH1Q02338 343 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RBBP4Q09028 425 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CBX3Q13185 183 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CRYMQ14894 314 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CCDC81Q6ZN84 652 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CACTIN-AS1Q8N1I8 211 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MLPHQ9BV36 600 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NKIRAS2Q9NYR9 191 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ANKRD6Q9Y2G4 727 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PER2O15055 1255 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 GLRA3O75311 464 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FCGR1AP12314 374 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RARGP13631 454 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PTPN1P18031 435 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ATP5F1P24539 256 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NPTX2P47972 431 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 RAB2AP61019 212 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SF1Q15637 639 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SLC18A3Q16572 532 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PPP1R15BQ5SWA1 713 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FIP1L1Q6UN15 594 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MOXD1Q6UVY6 613 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 IKBIPQ70UQ0 350 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 KRT74Q7RTS7 529 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MICU2Q8IYU8 434 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MPP5Q8N3R9 675 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MAB21L3Q8N8X9 362 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ATG16L2Q8NAA4 619 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 OR10H5Q8NGA6 315 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 C18orf25Q96B23 403 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 ASB2Q96Q27 587 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CDH9Q9ULB4 789 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 PGK1P00558 417 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 IL6P05231 212 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 CSTF2P33240 577 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SLC26A3P40879 764 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 HSPA13P48723 471 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 SEC13P55735 322 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 NAA20P61599 178 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 WDR45BQ5MNZ6 344 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 MROH9Q5TGP6 573 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 GPSM1Q86YR5 675 aa6.22□□□□□ -1.41
SCN1A-217ENST00000637988 FAM120BQ96EK7 910 aaKnown RBP6.22□□□□□ -1.41
SCN1A-217ENST00000637988 TBL1YQ9BQ87 522 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms