RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZBED1O96006 694 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 SLC6A4P31645 630 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 ELAVL3Q14576 367 aaKnown RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 POM121L1PQ3SYA9 428 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 FAM133BQ5BKY9 247 aaKnown RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 TCERG1LQ5VWI1 586 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 FOXR1Q6PIV2 292 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 RBM44Q6ZP01 1051 aaKnown RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 NDRG1Q92597 394 aaKnown RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 ERCC4Q92889 916 aaPredicted RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 DHTKD1Q96HY7 919 aaPredicted RBP16.85■□□□□ 0.29
CLN3-264ENST00000637985 DUSP23Q9BVJ7 150 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 CISHQ9NSE2 258 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 MAN2B2Q9Y2E5 1009 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 COQ4Q9Y3A0 265 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 RP1P56715 2156 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 GOLGA6L7A0A1B0GV03 622 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 NOBOXO60393 691 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 ITGA2BP08514 1039 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 TKTL1P51854 596 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 PMS1P54277 932 aaKnown RBP16.84■□□□□ 0.29
CLN3-264ENST00000637985 DCAF17Q5H9S7 520 aaPredicted RBP16.84■□□□□ 0.29
CLN3-264ENST00000637985 PITRM1Q5JRX3 1037 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 ARRDC3Q96B67 414 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 HEXIM2Q96MH2 286 aaKnown RBP16.84■□□□□ 0.29
CLN3-264ENST00000637985 METTL14Q9HCE5 456 aaKnown RBP16.84■□□□□ 0.29
CLN3-264ENST00000637985 STIM2Q9P246 746 aa16.84■□□□□ 0.29
CLN3-264ENST00000637985 ARMCX3Q9UH62 379 aaPredicted RBP16.84■□□□□ 0.29
CLN3-264ENST00000637985 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.83■□□□□ 0.28
CLN3-264ENST00000637985 TRIM49BA6NDI0 452 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 MSI1O43347 362 aaKnown RBP16.83■□□□□ 0.28
CLN3-264ENST00000637985 PPFIA2O75334 1257 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 TCEA3O75764 348 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 ECT2LQ008S8 904 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 SRSF6Q13247 344 aaKnown RBP16.83■□□□□ 0.28
CLN3-264ENST00000637985 ZNF177Q13360 481 aaPredicted RBP16.83■□□□□ 0.28
CLN3-264ENST00000637985 CDKN3Q16667 212 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 CBWD6Q4V339 395 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 ZNF394Q53GI3 561 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 FSCBQ5H9T9 825 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 CBWD3Q5JTY5 395 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 CBWD5Q5RIA9 395 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 FOXR2Q6PJQ5 311 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 MMS22LQ6ZRQ5 1243 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 TPCN2Q8NHX9 752 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 RNF139Q8WU17 664 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 EDEM1Q92611 657 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 IFT43Q96FT9 208 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 CEP63Q96MT8 703 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 ULBP1Q9BZM6 244 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 SLC25A18Q9H1K4 315 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 MAN1B1Q9UKM7 699 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 PCDHGA7Q9Y5G6 932 aa16.83■□□□□ 0.28
CLN3-264ENST00000637985 SPTBN1Q01082 2364 aaKnown RBP16.82■□□□□ 0.28
CLN3-264ENST00000637985 NEBLO76041 1014 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 IGLV3-27P01718 113 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 RAD23BP54727 409 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 TGIF1Q15583 401 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 TBR1Q16650 682 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 AGBL4Q5VU57 503 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 BSPRYQ5W0U4 402 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 ZCCHC8Q6NZY4 707 aaKnown RBP16.82■□□□□ 0.28
CLN3-264ENST00000637985 GUSBP11Q6P575 273 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 EFL1Q7Z2Z2 1120 aaKnown RBP16.82■□□□□ 0.28
CLN3-264ENST00000637985 SLC4A11Q8NBS3 891 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 HJURPQ8NCD3 748 aaPredicted RBP16.82■□□□□ 0.28
CLN3-264ENST00000637985 TATDN2Q93075 761 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 SLC35C1Q96A29 364 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 MYEOVQ96EZ4 313 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 PRICKLE1Q96MT3 831 aaPredicted RBP16.82■□□□□ 0.28
CLN3-264ENST00000637985 NCKIPSDQ9NZQ3 722 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 ACSL6Q9UKU0 697 aa16.82■□□□□ 0.28
CLN3-264ENST00000637985 CCDC187A0A096LP49 1063 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 CPED1A4D0V7 1026 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 EME2A4GXA9 379 aaPredicted RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 RIOK3O14730 519 aaKnown RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 ACSL4O60488 711 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 VAV1P15498 845 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 SLC5A2P31639 672 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 SLC11A2P49281 568 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 PDX1P52945 283 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 SLC8A3P57103 927 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 YWHAEP62258 255 aaKnown RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 RPS24P62847 133 aaKnown RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 FOXK1P85037 733 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 CNTN1Q12860 1018 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 MAPK8IP2Q13387 824 aaPredicted RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 CUL2Q13617 745 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 ARHGAP17Q68EM7 881 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 SLC22A18ASQ8N1D0 253 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 CARNMT1Q8N4J0 409 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 OR13H1Q8NG92 308 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 AZIN2Q96A70 460 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 RPL10LQ96L21 214 aaKnown RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 SPAG5Q96R06 1193 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 PREBQ9HCU5 417 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 WDR70Q9NW82 654 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 GEMIN8Q9NWZ8 242 aaKnown RBP16.81■□□□□ 0.28
CLN3-264ENST00000637985 SARDHQ9UL12 918 aa16.81■□□□□ 0.28
CLN3-264ENST00000637985 ANKRD17O75179 2603 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms