RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 FBXL12Q9NXK8 326 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 TAS2R14Q9NYV8 317 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SERGEFQ9UGK8 458 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 SLC25A13Q9UJS0 675 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 NCKAP1Q9Y2A7 1128 aa19.74■□□□□ 0.75
CLN3-260ENST00000637578 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.74■□□□□ 0.75
CLN3-260ENST00000637578 A0A0D9SEW6 157 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 A0A1B0GTW7 788 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 ILVBLA1L0T0 632 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 MFAP3LO75121 409 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 TNFAIP3P21580 790 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 GPD1P21695 349 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 OR1E1P30953 314 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 SLC8A1P32418 973 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 ZNF143P52747 638 aaPredicted RBP19.73■□□□□ 0.75
CLN3-260ENST00000637578 ADKP55263 362 aaKnown RBP19.73■□□□□ 0.75
CLN3-260ENST00000637578 KRT83P78385 493 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 SFSWAPQ12872 951 aaKnown RBP19.73■□□□□ 0.75
CLN3-260ENST00000637578 HGSNATQ68CP4 663 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 PPP1R2P3Q6NXS1 205 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 TFAP2DQ7Z6R9 452 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 FAM172AQ8WUF8 416 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 NTAN1Q96AB6 310 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 FAM131CQ96AQ9 280 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 DNAJC7Q99615 494 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 C2orf49Q9BVC5 232 aaPredicted RBP19.73■□□□□ 0.75
CLN3-260ENST00000637578 EIF2B4Q9UI10 523 aaKnown RBP19.73■□□□□ 0.75
CLN3-260ENST00000637578 VPS51Q9UID3 782 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 FZD4Q9ULV1 537 aa19.73■□□□□ 0.75
CLN3-260ENST00000637578 CACNA1EQ15878 2313 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 KCNK5O95279 499 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 ADH1BP00325 375 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 SYPP08247 313 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 ADRB1P08588 477 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 C5AR1P21730 350 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 RRM1P23921 792 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 RPL7AP62424 266 aaKnown RBP19.72■□□□□ 0.75
CLN3-260ENST00000637578 SCAPQ12770 1279 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 DLG2Q15700 870 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 DNAJC24Q6P3W2 148 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 ZNF571Q7Z3V5 609 aaPredicted RBP19.72■□□□□ 0.75
CLN3-260ENST00000637578 AADATQ8N5Z0 425 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 DCAF4L2Q8NA75 395 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 OR8K1Q8NGG5 319 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 NEUROG2Q9H2A3 272 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 OSGEPQ9NPF4 335 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 NEU3Q9UQ49 428 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 DOCK4Q8N1I0 1966 aa19.72■□□□□ 0.75
CLN3-260ENST00000637578 UPK3BL1B0FP48 263 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 AKR1B15C9JRZ8 316 aaPredicted RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 UPK3BL2E5RIL1 263 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 FAM72CH0Y354 149 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 MCF2LO15068 1137 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 ALOX15BO15296 676 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 BCAT2O15382 392 aaPredicted RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 SNAP91O60641 907 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 MT-CO1P00395 513 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 GZMAP12544 262 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 SRCP12931 536 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 CSRP1P21291 193 aaKnown RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 CDC25BP30305 580 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 HNRNPH3P31942 346 aaKnown RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 MAPK8P45983 427 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 GALCP54803 685 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 TDRD12Q587J7 1177 aaKnown RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 FAM72AQ5TYM5 149 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 FAM72DQ6L9T8 149 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 NLRP14Q86W24 1093 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 FAM72BQ86X60 149 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 CNGA4Q8IV77 575 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 CCDC185Q8N715 623 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 BIRC7Q96CA5 298 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 ORAI3Q9BRQ5 295 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 MAGEB5Q9BZ81 275 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 ABHD10Q9NUJ1 306 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 DNAAF2Q9NVR5 837 aaKnown RBP19.71■□□□□ 0.75
CLN3-260ENST00000637578 PPM1HQ9ULR3 514 aa19.71■□□□□ 0.75
CLN3-260ENST00000637578 CXorf51AA0A1B0GTR3 108 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 A0A1W2PP55 124 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 GJB3O75712 270 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 ZMPSTE24O75844 475 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 SERPING1P05155 500 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 GOT1P17174 413 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 ACCSLQ4AC99 568 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 DRC7Q8IY82 874 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 ZCCHC9Q8N567 271 aaKnown RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 MCEEQ96PE7 176 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 CNPY3Q9BT09 278 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 ZDHHC5Q9C0B5 715 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 SLCO1B1Q9Y6L6 691 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 ASCC3Q8N3C0 2202 aaKnown RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 CCP110O43303 1012 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 RNASEH2AO75792 299 aaKnown RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 LRIG2O94898 1065 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 IGHV4-34P06331 123 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 PLEKP08567 350 aaPredicted RBP19.7■□□□□ 0.74
CLN3-260ENST00000637578 RHOQP17081 205 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 DRD3P35462 400 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 PSMD8P48556 350 aa19.7■□□□□ 0.74
CLN3-260ENST00000637578 CLCN6P51797 869 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms