RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 C11orf96Q7Z7L8 435 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 REPS2Q8NFH8 660 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ACTRT2Q8TDY3 377 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 FAM149B1Q96BN6 582 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PABPC5Q96DU9 382 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PHF12Q96QT6 1004 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ZIC5Q96T25 663 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TRIM56Q9BRZ2 755 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TRIM62Q9BVG3 475 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CYP4F11Q9HBI6 524 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC4Q9HBW1 653 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SEPT3Q9UH03 358 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ADAMTS5Q9UNA0 930 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CDYLQ9Y232 598 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ASB3Q9Y575 518 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 COL1A2P08123 1366 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 A0A0G2JLL6 359 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SPDYE16A6NNV3 312 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CAPN14A8MX76 684 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TPP1O14773 563 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TRIM13O60858 407 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LGR5O75473 907 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RFPL1O75677 317 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 NFICP08651 508 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CD48P09326 243 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 GSTT1P30711 240 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 POLD2P49005 469 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 NPY2RP49146 381 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SULT1E1P49888 294 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CDC16Q13042 620 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PRKAA1Q13131 559 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 MMRN1Q13201 1228 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 MTM1Q13496 603 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LAMC2Q13753 1193 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PCBP1Q15365 356 aaKnown RBP eCLIP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DPYSL2Q16555 572 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TMEM259Q4ZIN3 620 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LIN52Q52LA3 116 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PLEKHG4Q58EX7 1191 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CELF3Q5SZQ8 465 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 NXNQ6DKJ4 435 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CES5AQ6NT32 575 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 KCNT2Q6UVM3 1135 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RFX8Q6ZV50 586 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 STRADAQ7RTN6 431 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ANKRD33Q7Z3H0 272 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PRRT2Q7Z6L0 340 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LINC00523Q86TU6 105 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DEFB107AQ8IZN7 70 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 C1orf127Q8N9H9 656 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 KYQ8NBH2 561 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 COLGALT1Q8NBJ5 622 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CCDC124Q96CT7 223 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 IFT43Q96FT9 208 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 HSFY1Q96LI6 401 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CCDC106Q9BWC9 280 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 KCNK13Q9HB14 408 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TCF7L2Q9NQB0 619 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DZANK1Q9NVP4 752 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 GPATCH2LQ9NWQ4 482 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PLK2Q9NYY3 685 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF112Q9UJU3 913 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TRHDEQ9UKU6 1024 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 KIAA1671Q9BY89 1806 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SF3B1O75533 1304 aaKnown RBP eCLIP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 DYTNA2CJ06 578 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 WDR27A2RRH5 827 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 GRXCR2A6NFK2 248 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 NOL3O60936 208 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TNFAIP8O95379 198 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ITGA2BP08514 1039 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 COX4I1P13073 169 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 PROZP22891 400 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CDH8P55286 799 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 VGLL4Q14135 290 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 FLOT2Q14254 428 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TEX44Q53QW1 395 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 STEAP4Q687X5 459 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SEL1L3Q68CR1 1132 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 KLC3Q6P597 504 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ATG14Q6ZNE5 492 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 CYP4V2Q6ZWL3 525 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SLC26A9Q7LBE3 791 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 TTC7BQ86TV6 843 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF410Q86VK4 478 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 FBXW8Q8N3Y1 598 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC52Q8N7C0 313 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 C7orf31Q8N865 590 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 WDR60Q8WVS4 1066 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 FAM136AQ96C01 138 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 VAT1Q99536 393 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 MMP19Q99542 508 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 SYT15Q9BQS2 421 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 MECRQ9BV79 373 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 UPF3AQ9H1J1 476 aaKnown RBP4.06□□□□□ -1.76
SCN1A-214ENST00000637038 EFCAB1Q9HAE3 211 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 USP29Q9HBJ7 922 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 ZDHHC7Q9NXF8 308 aa4.06□□□□□ -1.76
SCN1A-214ENST00000637038 RRN3Q9NYV6 651 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms