RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SUN2Q9UH99 717 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 SLCO3A1Q9UIG8 710 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 HS3ST2Q9Y278 367 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 HYOU1Q9Y4L1 999 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 PCDHGA2Q9Y5H1 932 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 ALG6Q9Y672 507 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 SPAG17Q6Q759 2223 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 VPS13AQ96RL7 3174 aa20.78■□□□□ 0.92
PTCD3-220ENST00000627371 DMDP11532 3685 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 CBX4O00257 560 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 ZMPSTE24O75844 475 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 CD48P09326 243 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 GLDCP23378 1020 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 CAMK2GQ13555 558 aaPredicted RBP20.77■□□□□ 0.92
PTCD3-220ENST00000627371 DPYSL3Q14195 570 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 PDK2Q15119 407 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 HNRNPA1L2Q32P51 320 aaKnown RBP20.77■□□□□ 0.92
PTCD3-220ENST00000627371 PARP15Q460N3 678 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 RHOT1Q8IXI2 618 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 SH2D3CQ8N5H7 860 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 KCTD6Q8NC69 237 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 HMGB4Q8WW32 186 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 PDLIM2Q96JY6 352 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 ZNF670Q9BS34 389 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 GOLPH3Q9H4A6 298 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 LRRC19Q9H756 370 aa20.77■□□□□ 0.92
PTCD3-220ENST00000627371 USP34Q70CQ2 3546 aa20.77■□□□□ 0.91
PTCD3-220ENST00000627371 SHROOM3Q8TF72 1996 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 A0A0U1RQJ8 604 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 CXorf51AA0A1B0GTR3 108 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 TTC34A8MYJ7 566 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 RASA4BC9J798 803 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 DCLK1O15075 740 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 AXIN1O15169 862 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 RASA4O43374 803 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ATP9BO43861 1147 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 GABRG2P18507 467 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 IL4RP24394 825 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 NDST2P52849 883 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 NAP1L1P55209 391 aaKnown RBP20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ARF5P84085 180 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ZFYVE27Q5T4F4 411 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 RETSATQ6NUM9 610 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ZC3H14Q6PJT7 736 aaKnown RBP20.76■□□□□ 0.91
PTCD3-220ENST00000627371 DAAM2Q86T65 1068 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 MAP7D3Q8IWC1 876 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ATRIPQ8WXE1 791 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ATOH1Q92858 354 aaPredicted RBP20.76■□□□□ 0.91
PTCD3-220ENST00000627371 ERLEC1Q96DZ1 483 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 HMCESQ96FZ2 354 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 KLC2Q9H0B6 622 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 FBRSQ9HAH7 460 aa20.76■□□□□ 0.91
PTCD3-220ENST00000627371 BCCIPQ9P287 314 aaKnown RBP eCLIP20.76■□□□□ 0.91
PTCD3-220ENST00000627371 EDDM13A0A1B0GTR0 161 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 TARSL2A2RTX5 802 aaKnown RBP20.75■□□□□ 0.91
PTCD3-220ENST00000627371 ZBTB24O43167 697 aaPredicted RBP20.75■□□□□ 0.91
PTCD3-220ENST00000627371 PSTPIP1O43586 416 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 LILRB5O75023 590 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 MT-CO1P00395 513 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 SRCP12931 536 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 NDUFV2P19404 249 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 AMPD1P23109 780 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 CLCN6P51797 869 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 COPAP53621 1224 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 MMRN1Q13201 1228 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 AFMIDQ63HM1 303 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 LINGO4Q6UY18 593 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 LZTR1Q8N653 840 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 NPWQ8N729 165 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 OR2T3Q8NH03 318 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 FRS2Q8WU20 508 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 FAF2Q96CS3 445 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 MRGPRX1Q96LB2 322 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 CALN1Q9BXU9 219 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 PRSS16Q9NQE7 514 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 TRIM10Q9UDY6 481 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 HPCAL4Q9UM19 191 aa20.75■□□□□ 0.91
PTCD3-220ENST00000627371 KDELR3O43731 214 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 SIN3BO75182 1162 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 C7P10643 843 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 KDELR1P24390 212 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 SERPINH1P50454 418 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 GEMIN4P57678 1058 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 SLC20A2Q08357 652 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 SERINC3Q13530 473 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 IFI16Q16666 785 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 TMCO3Q6UWJ1 677 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 VSIG1Q86XK7 387 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 ZNF354CQ86Y25 554 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 ARHGAP12Q8IWW6 846 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 PGBD3Q8N328 593 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 ATP11CQ8NB49 1132 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 RAPGEF5Q92565 580 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 PTPRN2Q92932 1015 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 CELF6Q96J87 481 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 TPSD1Q9BZJ3 242 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 TSGA10Q9BZW7 698 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 SLC39A8Q9C0K1 460 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 MKRN2Q9H000 416 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 MTG2Q9H4K7 406 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms