RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FAM47EQ6ZV65 393 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 UNC5BQ8IZJ1 945 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.51■■□□□ 1.19
PNKP-220ENST00000627232 USP33Q8TEY7 942 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 SOX13Q9UN79 622 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 LTBP2Q14767 1821 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 DRGXA6NNA5 263 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 CRHR1P34998 444 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 RFC2P35250 354 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 OTOP3Q7RTS5 596 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 RASSF3Q86WH2 238 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 CCDC117Q8IWD4 279 aaPredicted RBP22.5■■□□□ 1.19
PNKP-220ENST00000627232 OVCA2Q8WZ82 227 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 ZNF669Q96BR6 464 aaPredicted RBP22.5■■□□□ 1.19
PNKP-220ENST00000627232 IGSF21Q96ID5 467 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 FAM111AQ96PZ2 611 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 CPNE1Q99829 537 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 NOL6Q9H6R4 1146 aaKnown RBP22.5■■□□□ 1.19
PNKP-220ENST00000627232 MANSC1Q9H8J5 431 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 KLHL14Q9P2G3 628 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 HSFX1Q9UBD0 423 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 TBX21Q9UL17 535 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 PLLPQ9Y342 182 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 HBS1LQ9Y450 684 aaKnown RBP22.5■■□□□ 1.19
PNKP-220ENST00000627232 PCNTO95613 3336 aa22.5■■□□□ 1.19
PNKP-220ENST00000627232 SLC12A8A0AV02 714 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 GSTA1P08263 222 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 ATF6P18850 670 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 ACTN3Q08043 901 aaPredicted RBP22.49■■□□□ 1.19
PNKP-220ENST00000627232 ANKRD20A4Q4UJ75 823 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 GRTP1Q5TC63 336 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 MROH9Q5TGP6 573 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 PDZD8Q8NEN9 1154 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 PPM1EQ8WY54 764 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 SPOCK2Q92563 424 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 FCRL3Q96P31 734 aaPredicted RBP22.49■■□□□ 1.19
PNKP-220ENST00000627232 TBL1YQ9BQ87 522 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 HAUS2Q9NVX0 235 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 ZFATQ9P243 1243 aa22.49■■□□□ 1.19
PNKP-220ENST00000627232 IPO11Q9UI26 975 aaKnown RBP22.49■■□□□ 1.19
PNKP-220ENST00000627232 COL4A6Q14031 1691 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 HTTP42858 3142 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 ZCWPW2A0A1B0GU75 182 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 TBX18O95935 607 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 GP5P40197 560 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 STXBP5Q5T5C0 1151 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 SNX30Q5VWJ9 437 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 ARMC3Q5W041 872 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 MIB1Q86YT6 1006 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 TRIM42Q8IWZ5 723 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 C10orf67Q8IYJ2 551 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 GBP7Q8N8V2 638 aaPredicted RBP22.48■■□□□ 1.19
PNKP-220ENST00000627232 GIPC2Q8TF65 315 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 BEGAINQ9BUH8 593 aa22.48■■□□□ 1.19
PNKP-220ENST00000627232 RBM22Q9NW64 420 aaKnown RBP eCLIP22.48■■□□□ 1.194e-6■■■□□ 16.3
PNKP-220ENST00000627232 UPP2O95045 317 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 IL1BP01584 269 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 HLA-DQB2P05538 268 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 SERPINB4P48594 390 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 LIG3P49916 1009 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 HNRNPDQ14103 355 aaKnown RBP22.47■■□□□ 1.19
PNKP-220ENST00000627232 CERCAMQ5T4B2 595 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 FBXL22Q6P050 247 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 CCDC63Q8NA47 563 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 ZNF784Q8NCA9 323 aaPredicted RBP22.47■■□□□ 1.19
PNKP-220ENST00000627232 KIFC1Q9BW19 673 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 VN1R3Q9BXE9 311 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 C12orf65Q9H3J6 166 aaKnown RBP22.47■■□□□ 1.19
PNKP-220ENST00000627232 RETREG1Q9H6L5 497 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 SLCO1B3Q9NPD5 702 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 ENTPD7Q9NQZ7 604 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 TXNDC16Q9P2K2 825 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 AFF4Q9UHB7 1163 aaKnown RBP22.47■■□□□ 1.19
PNKP-220ENST00000627232 KLF11O14901 512 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 ADAM12O43184 909 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 TLR5O60602 858 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 NEBLO76041 1014 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 ERVK-10P10266 1014 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 OR1D2P34982 312 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 ADRA1AP35348 466 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 TNK2Q07912 1038 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 SF3A3Q12874 501 aaKnown RBP eCLIP22.47■■□□□ 1.193e-6■■■□□ 19.1
PNKP-220ENST00000627232 RAP1GAP2Q684P5 730 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 CDHR3Q6ZTQ4 885 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 OTOAQ7RTW8 1153 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 NDUFAF2Q8N183 169 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 UBP1Q9NZI7 540 aa22.47■■□□□ 1.19
PNKP-220ENST00000627232 WDR91A4D1P6 747 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 ATP9BO43861 1147 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 MAPKAPK2P49137 400 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 RENBPP51606 427 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 MPP3Q13368 585 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 DBN1Q16643 649 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 ALFQ53S48 1182 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 PCID2Q5JVF3 399 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 FYB2Q5VWT5 728 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 CES3Q6UWW8 571 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 SPATA22Q8NHS9 363 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 ZNF398Q8TD17 642 aa22.46■■□□□ 1.19
PNKP-220ENST00000627232 PTCD2Q8WV60 388 aaKnown RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms