RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DSELQ8IZU8 1212 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 DPP10Q8N608 796 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TMEM161BQ8NDZ6 487 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 CLIP3Q96DZ5 547 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 TPD52L3Q96J77 140 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 ABCG4Q9H172 646 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 COMMD8Q9NX08 183 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 DNPEPQ9ULA0 475 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PPIEQ9UNP9 301 aaKnown RBP11.56□□□□□ -0.56
CLIP1-219ENST00000620786 C2CD2Q9Y426 696 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 PCDHB9Q9Y5E1 797 aa11.56□□□□□ -0.56
CLIP1-219ENST00000620786 GSAPA4D1B5 854 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 PSMB4P28070 264 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 IL2P60568 153 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 PKN2Q16513 984 aaKnown RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 PIGZQ86VD9 579 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 MICU2Q8IYU8 434 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 TRPC4APQ8TEL6 797 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 RERGQ96A58 199 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 CFAP97Q9P2B7 532 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 KANSL1LA0AUZ9 987 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SEPT4O43236 478 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 USP2O75604 605 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 ANKRD52Q8NB46 1076 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SPPL2AQ8TCT8 520 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 HSFY1Q96LI6 401 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 QRFPRQ96P65 431 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 NXF3Q9H4D5 531 aaKnown RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 BTBD7Q9P203 1132 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 ARHGEF28Q8N1W1 1705 aaKnown RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 A0A087X0B3 334 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 A0A096LPK6 155 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 CCDC154A6NI56 674 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SIGLEC16A6NMB1 481 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 APOC4-APOC2K7ER74 178 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 APOC2P02655 101 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 HSPA14Q0VDF9 509 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 UGCGQ16739 394 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SPRYD7Q5W111 196 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 C10orf88Q9H8K7 445 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 ETNK2Q9NVF9 386 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 ATP6V1HQ9UI12 483 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SNX13Q9Y5W8 968 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 CNTNAP1P78357 1384 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 OPLAHO14841 1288 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 JAK1P23458 1154 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 HSPA13P48723 471 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 PPP3CAQ08209 521 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 PSTKQ8IV42 348 aaKnown RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 FBXL16Q8N461 479 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 TOP6BLQ8N6T0 577 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 ATG16L2Q8NAA4 619 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 FBXO25Q8TCJ0 367 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 TRIT1Q9H3H1 467 aaKnown RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 SAE1Q9UBE0 346 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-219ENST00000620786 STARD13Q9Y3M8 1113 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 RWDD3Q9Y3V2 267 aa11.55□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3DA0A087WVF3 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3IA0A087WXS9 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3EA0A087X179 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3KA0A087X1G2 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3FA6NER0 549 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CHURC1-FNTBB4DL54 471 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3LB9A6J9 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3HP0C7X1 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PABPC1P11940 636 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3GQ6DHY5 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CAPRIN2Q6IMN6 1127 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3CQ6IPX1 549 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 AFTPHQ6ULP2 937 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 IL27RAQ6UWB1 636 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 RIPOR1Q6ZS17 1223 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TBC1D3Q8IZP1 549 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 SIX5Q8N196 739 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 NACC2Q96BF6 587 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DEPDC7Q96QD5 511 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TSPAN18Q96SJ8 248 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 AGXT2Q9BYV1 514 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DDX20Q9UHI6 824 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PTCH2Q9Y6C5 1203 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CCDC189A1A4V9 331 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 BUD23O43709 281 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TLR5O60602 858 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ATP9AO75110 1047 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 FEN1P39748 380 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 NAB1Q13506 487 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PEX6Q13608 980 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PCID2Q5JVF3 399 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 LYPLAL1Q5VWZ2 237 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 AGMOQ6ZNB7 445 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 RBM43Q6ZSC3 357 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ZNF786Q8N393 782 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 OR10G6Q8NH81 332 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 SMG7Q92540 1137 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 COL26A1Q96A83 441 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 FANCEQ9HB96 536 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TMBIM4Q9HC24 238 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms