RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ARFGAP1Q8N6T3 406 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF781Q8N8C0 355 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 TDRD5Q8NAT2 981 aaKnown RBP11.02□□□□□ -0.65
UPF3A-212ENST00000619079 PCYOX1LQ8NBM8 494 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 MINDY2Q8NBR6 621 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 TFAP2CQ92754 450 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 PBXIP1Q96AQ6 731 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 TSPAN18Q96SJ8 248 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 XPNPEP3Q9NQH7 507 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 UTP6Q9NYH9 597 aaKnown RBP11.02□□□□□ -0.65
UPF3A-212ENST00000619079 NUB1Q9Y5A7 615 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 CNTNAP2Q9UHC6 1331 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 BCLAF3A2AJT9 711 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SLCO1B7G3V0H7 640 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 HDAC3O15379 428 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 DHX15O43143 795 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 VAPBO95292 243 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 CYP2C9P11712 490 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ITGB5P18084 799 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SLC7A1P30825 629 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ARRB2P32121 409 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 LIG4P49917 911 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 BMXP51813 675 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NEK2P51955 445 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 CDH15P55291 814 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TRAP1Q12931 704 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TRIM25Q14258 630 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NHSL2Q5HYW2 709 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF362Q5T0B9 420 aaPredicted RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 CYP4A22Q5TCH4 519 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 STEAP4Q687X5 459 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 PPP4R4Q6NUP7 873 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ZBTB49Q6ZSB9 765 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SIX6OS1Q8N1H7 587 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF786Q8N393 782 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SLC4A11Q8NBS3 891 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 GRIN3AQ8TCU5 1115 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 USP13Q92995 863 aaPredicted RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ATP6V1E2Q96A05 226 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ANKRD36BP1Q96IX9 119 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 OR52B2Q96RD2 323 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TUBA1CQ9BQE3 449 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ILKAPQ9H0C8 392 aaPredicted RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 RAVER2Q9HCJ3 691 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 WBP1LQ9NX94 342 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TCEAL9Q9UHQ7 104 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 MID2Q9UJV3 735 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 A0A1W2PPW3 197 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TPD52L2O43399 206 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 PLA2G6O60733 806 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NELFEP18615 380 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TGM2P21980 687 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 MYF6P23409 242 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 JAK3P52333 1124 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NME5P56597 212 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 YWHAEP62258 255 aaKnown RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 PPM1LQ5SGD2 360 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SEL1L3Q68CR1 1132 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 LBX2Q6XYB7 198 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ANKFN1Q8N957 763 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 MFSD2AQ8NA29 543 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 GPRC5AQ8NFJ5 357 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 CGRRF1Q99675 332 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 HGH1Q9BTY7 390 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NPLQ9BXD5 320 aaPredicted RBP11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SEMA6AQ9H2E6 1030 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 R3HDMLQ9H3Y0 253 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 RNPEPQ9H4A4 650 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 ARMC7Q9H6L4 198 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 PRDM16Q9HAZ2 1276 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TXNRD2Q9NNW7 524 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SAGE1Q9NXZ1 904 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 NCKIPSDQ9NZQ3 722 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 PKD2L1Q9P0L9 805 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 TXNDC16Q9P2K2 825 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 USP18Q9UMW8 372 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 SNX13Q9Y5W8 968 aa11.01□□□□□ -0.65
UPF3A-212ENST00000619079 DYTNA2CJ06 578 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 LSM1O15116 133 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 PAPSS1O43252 624 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 KDM1AO60341 852 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ENDOD1O94919 500 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 TRUB2O95900 331 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 ALOX5P09917 674 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 P4HA1P13674 534 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 TYK2P29597 1187 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 MIPP30301 263 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 MSX2P35548 267 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 CCNA1P78396 465 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 CTBSQ01459 385 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 TMEM132BQ14DG7 1078 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 FAM110CQ1W6H9 321 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AARS2Q5JTZ9 985 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 ANKRD26P1Q6NSI1 321 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 XKR5Q6UX68 686 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ATG14Q6ZNE5 492 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 LRTOMTQ8WZ04 291 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 TAMM41Q96BW9 452 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 FAM84AQ96KN4 292 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF385DQ9H6B1 395 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms