RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ARIH1Q9Y4X5 557 aaPredicted RBP5.85□□□□□ -1.47
CPNE3-208ENST00000614678 IGLV3-10A0A075B6K4 115 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 DRGXA6NNA5 263 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 MFAP3LO75121 409 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ZMPSTE24O75844 475 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 EPHB2P29323 1055 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 MAPK8P45983 427 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 DNA2P51530 1060 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ZNF33AQ06730 810 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 IHHQ14623 411 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 EOGTQ5NDL2 527 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 CAMKK1Q8N5S9 505 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 HMCESQ96FZ2 354 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 CAMK1GQ96NX5 476 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 FZD3Q9NPG1 666 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 EIF2B4Q9UI10 523 aaKnown RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 TBC1D30Q9Y2I9 924 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 H0Y8X5 98 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 MUSKO15146 869 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 IL1BP01584 269 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 RHOCP08134 193 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 FAM193AP78312 1265 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 BNC1Q01954 994 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 CAMK2GQ13555 558 aaPredicted RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 TCEA2Q15560 299 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 RSPO4Q2I0M5 234 aaPredicted RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 DPY19L3Q6ZPD9 716 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 MICALCLQ6ZW33 695 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 SLFN11Q7Z7L1 901 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 MARCH9Q86YJ5 346 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ZDHHC17Q8IUH5 632 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 AZIN2Q96A70 460 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 DNAJC7Q99615 494 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 SEMA4AQ9H3S1 761 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 NHEJ1Q9H9Q4 299 aaPredicted RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 CWC15Q9P013 229 aaKnown RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ANAPC7Q9UJX3 599 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 SPENQ96T58 3664 aaKnown RBP5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ATMQ13315 3056 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 BOD1L1Q8NFC6 3051 aa5.84□□□□□ -1.47
CPNE3-208ENST00000614678 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 CDX4O14627 284 aaPredicted RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 MAP3K13O43283 966 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 SYNCRIPO60506 623 aaKnown RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 SERPING1P05155 500 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 AMPD1P23109 780 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 IL4RP24394 825 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 ETFBP38117 255 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 PTPN9P43378 593 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 MARCKSL1P49006 195 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 ADCY2Q08462 1091 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 SEMA3BQ13214 749 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 ZNF177Q13360 481 aaPredicted RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 HNRNPA1L2Q32P51 320 aaKnown RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 FIGNQ5HY92 759 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 MPP7Q5T2T1 576 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 ATP11CQ8NB49 1132 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 OR2A12Q8NGT7 310 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 SNX19Q92543 992 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 POLMQ9NP87 494 aaPredicted RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 KIAA1522Q9P206 1035 aaPredicted RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 REXO2Q9Y3B8 237 aaKnown RBP5.84□□□□□ -1.48
CPNE3-208ENST00000614678 TRPM6Q9BX84 2022 aa5.84□□□□□ -1.48
CPNE3-208ENST00000614678 A0A1W2PQJ5 194 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 CALB1P05937 261 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 RARAP10276 462 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 MAGEA9P43362 315 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 ZNF75DP51815 510 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 NUBP1P53384 320 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 NRLP54845 237 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 TAS2R38P59533 333 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 IL9RQ01113 521 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 C5orf22Q49AR2 442 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 USP39Q53GS9 565 aaKnown RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 IL31Q6EBC2 164 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 NCEH1Q6PIU2 408 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 SH2D3CQ8N5H7 860 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 BIRC7Q96CA5 298 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 ORAI3Q9BRQ5 295 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 WSB2Q9NYS7 404 aaPredicted RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 SAE1Q9UBE0 346 aaPredicted RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 AP4E1Q9UPM8 1137 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 ASXL3Q9C0F0 2248 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 ITIH6Q6UXX5 1313 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 MED19A0JLT2 244 aaPredicted RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 A8MX80 341 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 RNASEH2AO75792 299 aaKnown RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 LATS1O95835 1130 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 SPINK2P20155 84 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 HOXA6P31267 233 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 CSNK1EP49674 416 aaKnown RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 SLC25A11Q02978 314 aaKnown RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 GNA12Q03113 381 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 BRMS1LQ5PSV4 323 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 PLA2G2CQ5R387 149 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 AADACL2Q6P093 401 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 RAD9BQ6WBX8 426 aa5.83□□□□□ -1.48
CPNE3-208ENST00000614678 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.83□□□□□ -1.48
CPNE3-208ENST00000614678 TRIM72Q6ZMU5 477 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms