RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 KCNH2Q12809 1159 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 DPYDQ12882 1025 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 SHBQ15464 509 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 COBLL1Q53SF7 1204 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 DCAF6Q58WW2 860 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 KCNT1Q5JUK3 1230 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 LAYNQ6UX15 382 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 ERICH1Q86X53 443 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 SPACA3Q8IXA5 215 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 AADATQ8N5Z0 425 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 FAM181AQ8N9Y4 354 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 UBA3Q8TBC4 463 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 DQX1Q8TE96 717 aaKnown RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 SNRNP27Q8WVK2 155 aaKnown RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 KCNE4Q8WWG9 221 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 SEMA4DQ92854 862 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 PTPRN2Q92932 1015 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 SLC39A13Q96H72 371 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 POM121Q96HA1 1249 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 LMLNQ96KR4 655 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 GSDMAQ96QA5 445 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 C2orf49Q9BVC5 232 aaPredicted RBP6.48□□□□□ -1.37
CUX1-220ENST00000607092 POPDC2Q9HBU9 364 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 NLGN3Q9NZ94 848 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 HPSEQ9Y251 543 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 PCDHB4Q9Y5E5 795 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 CENPEQ02224 2701 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 SHROOM3Q8TF72 1996 aa6.48□□□□□ -1.37
CUX1-220ENST00000607092 MUC22E2RYF6 1773 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 USP9XQ93008 2570 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 KCNU1A8MYU2 1149 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 B8ZZF3 427 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 TULP2O00295 520 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 PSMA7O14818 248 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 SIGLEC6O43699 453 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ATP9BO43861 1147 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 LZTS3O60299 673 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 OPA1O60313 960 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 TCEA3O75764 348 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 MOCS2O96007 188 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 THEGLP0DJG4 465 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 SFTPCP11686 197 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 C6P13671 934 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 TACR2P21452 398 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 HNRNPA2B1P22626 353 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 DGKAP23743 735 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 SLC6A4P31645 630 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 RPL34P49207 117 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 GABREP78334 506 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 DNM1Q05193 864 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 KCNMA1Q12791 1236 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 BNIP3Q12983 259 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ZNF177Q13360 481 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 ACCSLQ4AC99 568 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 PRAMEF14Q5SWL7 426 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ZCCHC8Q6NZY4 707 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 PMF1Q6P1K2 205 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 KDM7AQ6ZMT4 941 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 KRBA2Q6ZNG9 492 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ENOSF1Q7L5Y1 443 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 KANSL1Q7Z3B3 1105 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 MARCH9Q86YJ5 346 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ZC3H3Q8IXZ2 948 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 LGI2Q8N0V4 545 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 CCAR2Q8N163 923 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 STK40Q8N2I9 435 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 PPM1KQ8N3J5 372 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ARL14Q8N4G2 192 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 TMIEQ8NEW7 156 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 WFDC5Q8TCV5 224 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 MAPK15Q8TD08 544 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 BTN2A2Q8WVV5 523 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ARHGEF26Q96DR7 871 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 EEF2KMTQ96G04 330 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 MED8Q96G25 268 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 HIC2Q96JB3 615 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 FCRL2Q96LA5 508 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 PRICKLE1Q96MT3 831 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 CEP63Q96MT8 703 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 NOX5Q96PH1 765 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 THAP9Q9H5L6 903 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 CLMPQ9H6B4 373 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 EBF2Q9HAK2 575 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ST7Q9NRC1 585 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ASNSD1Q9NWL6 643 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 RRN3Q9NYV6 651 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ARHGAP20Q9P2F6 1191 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 SERGEFQ9UGK8 458 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 SLCO3A1Q9UIG8 710 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 VPS28Q9UK41 221 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 INTS6Q9UL03 887 aaKnown RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 PPM1HQ9ULR3 514 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 MAPK8IP1Q9UQF2 711 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 PCDHGA8Q9Y5G5 932 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 HS3ST3A1Q9Y663 406 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 CSNK1G3Q9Y6M4 447 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 ATMQ13315 3056 aa6.47□□□□□ -1.37
CUX1-220ENST00000607092 USP9YO00507 2555 aaPredicted RBP6.47□□□□□ -1.37
CUX1-220ENST00000607092 CXorf51AA0A1B0GTR3 108 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms