RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PCDHA3Q9Y5H8 950 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 CXorf51AA0A1B0GTR3 108 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 RASA4BC9J798 803 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 RASA4O43374 803 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 HOXB2P14652 356 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 PRKCHP24723 683 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 MARCKSL1P49006 195 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 ST8SIA6P61647 398 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 ODF2Q5BJF6 829 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 TMEM92Q6UXU6 159 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 PEX26Q7Z412 305 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 ARHGAP12Q8IWW6 846 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 UBE2Q2Q8WVN8 375 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 RNF25Q96BH1 459 aaPredicted RBP19.79■□□□□ 0.76
UPF1-209ENST00000600310 HMCESQ96FZ2 354 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 RPL10LQ96L21 214 aaKnown RBP19.79■□□□□ 0.76
UPF1-209ENST00000600310 RNF157Q96PX1 679 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 SLC39A8Q9C0K1 460 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 ETNK2Q9NVF9 386 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 SLCO3A1Q9UIG8 710 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 SLC25A13Q9UJS0 675 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 SLC8A2Q9UPR5 921 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 HS3ST2Q9Y278 367 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 MFHAS1Q9Y4C4 1052 aa19.79■□□□□ 0.76
UPF1-209ENST00000600310 KMT2EQ8IZD2 1858 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 A0A1W2PQF6 199 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 CCDC66A2RUB6 948 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 K7ESF4 209 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 CBX4O00257 560 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 KDELR3O43731 214 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 ZRANB2O95218 330 aaKnown RBP eCLIP19.78■□□□□ 0.76
UPF1-209ENST00000600310 GLDCP23378 1020 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 HOXA6P31267 233 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 NNMTP40261 264 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 STK19P49842 368 aaPredicted RBP19.78■□□□□ 0.76
UPF1-209ENST00000600310 DGKEP52429 567 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 ARF5P84085 180 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 SLC20A2Q08357 652 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 TAZQ16635 292 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 RETSATQ6NUM9 610 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 RCOR2Q8IZ40 523 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 PQLC3Q8N755 202 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 CELF6Q96J87 481 aaKnown RBP19.78■□□□□ 0.76
UPF1-209ENST00000600310 CD248Q9HCU0 757 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 FBXO4Q9UKT5 387 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 HPCAL4Q9UM19 191 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 ATG2BQ96BY7 2078 aa19.78■□□□□ 0.76
UPF1-209ENST00000600310 ARHGAP42A6NI28 874 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 ZSCAN12O43309 604 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 ATP9BO43861 1147 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 FTCDO95954 541 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 HLA-EP13747 358 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 SERPINB6P35237 376 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 PEX5P50542 639 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 SERINC3Q13530 473 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 PAFAH1B3Q15102 231 aaKnown RBP19.77■□□□□ 0.76
UPF1-209ENST00000600310 NCBP2-AS2Q69YL0 99 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 MFSD7Q6UXD7 560 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 REXO1L1PQ8IX06 675 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 CAMKK1Q8N5S9 505 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 EXD1Q8NHP7 514 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 PRRX2Q99811 253 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 PRDM16Q9HAZ2 1276 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 SUN2Q9UH99 717 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 RAD54BQ9Y620 910 aa19.77■□□□□ 0.76
UPF1-209ENST00000600310 MYO18AQ92614 2054 aaKnown RBP19.77■□□□□ 0.75
UPF1-209ENST00000600310 ZSCAN5CA6NGD5 496 aaPredicted RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 MIF4GDA9UHW6 222 aaKnown RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 MT-CO1P00395 513 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 EPHX1P07099 455 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 TDGF1P13385 188 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 CDKN2BP42772 138 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 PAPOLAP51003 745 aaKnown RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 CLCN6P51797 869 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 CAMK2GQ13555 558 aaPredicted RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 STARD3Q14849 445 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 ANGPT1Q15389 498 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 HNRNPA1L2Q32P51 320 aaKnown RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 KIAA1211LQ6NV74 962 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 LINGO4Q6UY18 593 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 SPOCD1Q6ZMY3 1216 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 SH2D3CQ8N5H7 860 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 TSTD1Q8NFU3 115 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 FRS2Q8WU20 508 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 RBM41Q96IZ5 413 aaKnown RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 HHIPQ96QV1 700 aa19.76■□□□□ 0.75
UPF1-209ENST00000600310 MAK16Q9BXY0 300 aaKnown RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 POLMQ9NP87 494 aaPredicted RBP19.76■□□□□ 0.75
UPF1-209ENST00000600310 TTC34A8MYJ7 566 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 SYNCRIPO60506 623 aaKnown RBP19.75■□□□□ 0.75
UPF1-209ENST00000600310 APBB3O95704 486 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 CD160O95971 181 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 SRCP12931 536 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 SERPINH1P50454 418 aaKnown RBP19.75■□□□□ 0.75
UPF1-209ENST00000600310 RWDD2BP57060 319 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 GEMIN4P57678 1058 aaKnown RBP19.75■□□□□ 0.75
UPF1-209ENST00000600310 CSTF1Q05048 431 aaKnown RBP19.75■□□□□ 0.75
UPF1-209ENST00000600310 SLC9A4Q6AI14 798 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 TSSK4Q6SA08 328 aa19.75■□□□□ 0.75
UPF1-209ENST00000600310 ZNF354CQ86Y25 554 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms