RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RNFT2Q96EX2 444 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 PCDHA11Q9Y5I1 949 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 RIMBP3CA6NJZ7 1639 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 RIMBP3BA6NNM3 1639 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 RIMBP3Q9UFD9 1639 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 NR5A2O00482 541 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 FDPSP14324 419 aaKnown RBP20.77■□□□□ 0.92
UPF1-207ENST00000599848 TRAPPC12Q8WVT3 735 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 PAFAH2Q99487 392 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 SIK3Q9Y2K2 1263 aa20.77■□□□□ 0.92
UPF1-207ENST00000599848 PIK3CDO00329 1044 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 DUSP11O75319 330 aaKnown RBP20.77■□□□□ 0.91
UPF1-207ENST00000599848 TCN1P20061 433 aaPredicted RBP20.77■□□□□ 0.91
UPF1-207ENST00000599848 PMS1P54277 932 aaKnown RBP20.77■□□□□ 0.91
UPF1-207ENST00000599848 RTP1P59025 263 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 DDR1Q08345 913 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 CEP78Q5JTW2 689 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 MON1AQ86VX9 555 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 STAG3L4Q8TBR4 150 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 KCTD14Q9BQ13 255 aaPredicted RBP20.77■□□□□ 0.91
UPF1-207ENST00000599848 UGT2B28Q9BY64 529 aa20.77■□□□□ 0.91
UPF1-207ENST00000599848 DGKIO75912 1065 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 GYPCP04921 128 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 FOXR1Q6PIV2 292 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 CACUL1Q86Y37 369 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 SPPL2AQ8TCT8 520 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 MYLK2Q9H1R3 596 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 PRNPP04156 253 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 PEG10Q86TG7 708 aaKnown RBP20.76■□□□□ 0.91
UPF1-207ENST00000599848 ZFYVE1Q9HBF4 777 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.76■□□□□ 0.91
UPF1-207ENST00000599848 VWDEQ8N2E2 1590 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3DA0A087WVF3 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3IA0A087WXS9 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3EA0A087X179 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3KA0A087X1G2 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3FA6NER0 549 aaPredicted RBP20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3LB9A6J9 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 BTN3A1O00481 513 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 FGRP09769 529 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3HP0C7X1 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 GABRR2P28476 465 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 CD52P31358 61 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 GLRBP48167 497 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 VAC14Q08AM6 782 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3GQ6DHY5 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3CQ6IPX1 549 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D3Q8IZP1 549 aaPredicted RBP20.76■□□□□ 0.91
UPF1-207ENST00000599848 SETD9Q8NE22 299 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 SLC22A17Q8WUG5 538 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 R3HCC1LQ7Z5L2 792 aaKnown RBP20.76■□□□□ 0.91
UPF1-207ENST00000599848 C7orf61Q8IZ16 206 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 OR52L1Q8NGH7 329 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 PCDHGB3Q9Y5G1 929 aa20.76■□□□□ 0.91
UPF1-207ENST00000599848 A0A087X0T9 212 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 LOC100653049A0A140TA62 436 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 TRDMT1O14717 391 aaKnown RBP20.75■□□□□ 0.91
UPF1-207ENST00000599848 KRT34O76011 436 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 EPN2O95208 641 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D25Q3MII6 688 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 GALNT18Q6P9A2 607 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 OR12D3Q9UGF7 316 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 CENPXA8MT69 81 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 ISM1B1AKI9 464 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 CES2O00748 559 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 GLI1P08151 1106 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 S100GP29377 79 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 ERVK-21P61565 698 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 RRP1BQ14684 758 aaKnown RBP20.75■□□□□ 0.91
UPF1-207ENST00000599848 CRYMQ14894 314 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 AP5B1Q2VPB7 878 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 XKR4Q5GH76 650 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 TMEM26Q6ZUK4 368 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 CSDE1O75534 798 aaKnown RBP20.75■□□□□ 0.91
UPF1-207ENST00000599848 KRT75O95678 551 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 PRR23CQ6ZRP0 262 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 EPHX4Q8IUS5 362 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 FNDC5Q8NAU1 212 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 NSMCE2Q96MF7 247 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 TRIM13O60858 407 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 RPP38P78345 283 aaKnown RBP20.75■□□□□ 0.91
UPF1-207ENST00000599848 MTF1Q14872 753 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 STXBP5Q5T5C0 1151 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 GPR158Q5T848 1215 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 TRPM8Q7Z2W7 1104 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 CAMK1DQ8IU85 385 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 FEM1CQ96JP0 617 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 POP1Q99575 1024 aaKnown RBP20.75■□□□□ 0.91
UPF1-207ENST00000599848 TBC1D30Q9Y2I9 924 aa20.75■□□□□ 0.91
UPF1-207ENST00000599848 AKAP3O75969 853 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 SLC29A2Q14542 456 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 RAP1GAP2Q684P5 730 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 USP49Q70CQ1 688 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 TC2NQ8N9U0 490 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 ANKRD52Q8NB46 1076 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 MAGEB18Q96M61 343 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 RHBGQ9H310 441 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 FAM105AQ9NUU6 356 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 CLIC5Q9NZA1 410 aa20.74■□□□□ 0.91
UPF1-207ENST00000599848 PIK3C2BO00750 1634 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms