RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TARSL2A2RTX5 802 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 K7ERQ8 282 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC31A1O15431 190 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 LATO43561 262 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 DFNA5O60443 496 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 LETM1O95202 739 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 MOCS3O95396 460 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 TRUB2O95900 331 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 ADH1BP00325 375 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 MT-CO1P00395 513 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 APOEP02649 317 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 MPOP05164 745 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CTSLP07711 333 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 SRPRAP08240 638 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 TBXAS1P24557 533 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 ARRB1P49407 418 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CLDN2P57739 230 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 TAS2R38P59533 333 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 NUCB2P80303 420 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 FKBP3Q00688 224 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 RHDQ02161 417 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 RTP5Q14D33 572 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 PROX2Q3B8N5 592 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CCDC40Q4G0X9 1142 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 C4orf17Q53FE4 359 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 ZNF658Q5TYW1 1059 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 AGBL4Q5VU57 503 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 ZNF574Q6ZN55 896 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 C14orf80Q86SX3 495 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 PASD1Q8IV76 773 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CCDC117Q8IWD4 279 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 SPACA3Q8IXA5 215 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 FMR1NBQ8N0W7 255 aaPredicted RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 AZIN2Q96A70 460 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 HSFY1Q96LI6 401 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 PRMT1Q99873 361 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 SEMA4CQ9C0C4 833 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CPNE5Q9HCH3 593 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 SCML1Q9UN30 329 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 CLCA2Q9UQC9 943 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 PAXBP1Q9Y5B6 917 aa8.9□□□□□ -0.98
SHKBP1-220ENST00000599716 F8P00451 2351 aa8.9□□□□□ -0.99
SHKBP1-220ENST00000599716 PMS2P1A4D2B8 440 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 F5H5T6 163 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 PLRG1O43660 514 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 SNAP91O60641 907 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 RNGTTO60942 597 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 NEBLO76041 1014 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CNTN5O94779 1100 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ENDOD1O94919 500 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 FBXO21O94952 628 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 MT-CO3P00414 261 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 IGLV3-25P01717 112 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CKMT2P17540 419 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 RXRGP48443 463 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 STX17P56962 302 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 DAB2P98082 770 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 TLE3Q04726 772 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 SFSWAPQ12872 951 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ELAVL3Q14576 367 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 STAT4Q14765 748 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ARID5BQ14865 1188 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 DLG2Q15700 870 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 OR6B2Q6IFH4 312 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 FBXL22Q6P050 247 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CRTC1Q6UUV9 634 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 PRICKLE2Q7Z3G6 844 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 PRPF39Q86UA1 669 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ERICH1Q86X53 443 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 DEFB106AQ8N104 65 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 MFSD2AQ8NA29 543 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CHST14Q8NCH0 376 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 OR13H1Q8NG92 308 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 RNF34Q969K3 372 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ARRDC3Q96B67 414 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 SKA1Q96BD8 255 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 ALG14Q96F25 216 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 BTN2A3PQ96KV6 586 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 RPRD1AQ96P16 312 aaPredicted RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 DDX50Q9BQ39 737 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CALN1Q9BXU9 219 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 GTPBP4Q9BZE4 634 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 INTS2Q9H0H0 1204 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 FAM204AQ9H8W3 233 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 TMPRSS4Q9NRS4 437 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 DDIT4Q9NX09 232 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 KIAA1257Q9ULG3 409 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 VANGL2Q9ULK5 521 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 SPENQ96T58 3664 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 KIF26BQ2KJY2 2108 aa8.89□□□□□ -0.99
SHKBP1-220ENST00000599716 CELSR1Q9NYQ6 3014 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 CELSR2Q9HCU4 2923 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 A0A1B0GVM2 712 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 A0A1W2PQU0 124 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 KCNU1A8MYU2 1149 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 BIN1O00499 593 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 THAP12O43422 761 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 SMAD6O43541 496 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 C1SP09871 688 aa8.88□□□□□ -0.99
SHKBP1-220ENST00000599716 PNMA6AP0CW24 399 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms