RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 IFT20Q8IY31 132 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 ZNF557Q8N988 423 aaPredicted RBP14.98□□□□□ -0.01
VRK3-212ENST00000596814 FIBINQ8TAL6 211 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 SEC14L1Q92503 715 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 FGF14Q92915 247 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 HLA-CQ95604 372 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 ZFYVE19Q96K21 471 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 SPATA13Q96N96 652 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 ATP13A1Q9HD20 1204 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 GDF3Q9NR23 364 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 PAK5Q9P286 719 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 C5orf42Q9H799 3197 aa14.98□□□□□ -0.01
VRK3-212ENST00000596814 MATN3O15232 486 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ECI2O75521 394 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 GCATO75600 419 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ADH5P11766 374 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ARSAP15289 507 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 PSMC3P17980 439 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 PTPN3P26045 913 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 RPL22P35268 128 aaKnown RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 ADCY8P40145 1251 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 CSKP41240 450 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 IL10RBQ08334 325 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 GPS1Q13098 491 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 GRM2Q14416 872 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 CCDC110Q8TBZ0 833 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 CASKIN2Q8WXE0 1202 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 FATE1Q969F0 183 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 FAM83CQ9BQN1 747 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 SPON2Q9BUD6 331 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 PLA2G2FQ9BZM2 168 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 EBF3Q9H4W6 596 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 KIAA1522Q9P206 1035 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 CLEC4EQ9ULY5 219 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 SNX24Q9Y343 169 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 COL4A3Q01955 1670 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 J3KR12 359 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 HOXC11O43248 304 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 PRAMEF11O60813 436 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 OPHN1O60890 802 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 TUBBP07437 444 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 MCM3P25205 808 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 MZF1P28698 734 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 RPL21P46778 160 aaKnown RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 NUMBP49757 651 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 IFI35P80217 286 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 GAD2Q05329 585 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 LMAN2Q12907 356 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ZBTB17Q13105 803 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ANKRD20A2Q5SQ80 823 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ANKRD20A1Q5TYW2 823 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ANKRD20A3Q5VUR7 823 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 WDR93Q6P2C0 686 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ARHGEF18Q6ZSZ5 1173 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 NSMCE1Q8WV22 266 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 MAML1Q92585 1016 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 LRRC45Q96CN5 670 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 SNF8Q96H20 258 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 VAT1Q99536 393 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 ACE2Q9BYF1 805 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 PARD6BQ9BYG5 372 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 CEP41Q9BYV8 373 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 PDFQ9HBH1 243 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 FAM114A2Q9NRY5 505 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 KLHL8Q9P2G9 620 aaPredicted RBP14.97□□□□□ -0.01
VRK3-212ENST00000596814 VPS28Q9UK41 221 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 HPCAL4Q9UM19 191 aa14.97□□□□□ -0.01
VRK3-212ENST00000596814 MYO18AQ92614 2054 aaKnown RBP14.96□□□□□ -0.01
VRK3-212ENST00000596814 KDELR3O43731 214 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 CCNB1P14635 433 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 TNFRSF8P28908 595 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 DRG2P55039 364 aaKnown RBP14.96□□□□□ -0.01
VRK3-212ENST00000596814 VSNL1P62760 191 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 CUL1Q13616 776 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 HTR4Q13639 388 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 TRADDQ15628 312 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 TEX44Q53QW1 395 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 FAM182AQ5T1J6 154 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 C4orf22Q6V702 233 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 ZNF567Q8N184 647 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 DCAF4L2Q8NA75 395 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 FEM1AQ9BSK4 669 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 ECT2Q9H8V3 914 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 HPS4Q9NQG7 708 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 OR51B4Q9Y5P0 310 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 NUMBLQ9Y6R0 609 aa14.96□□□□□ -0.01
VRK3-212ENST00000596814 XIRP2A4UGR9 3374 aa14.96□□□□□ -0.02
VRK3-212ENST00000596814 SPTBN5Q9NRC6 3674 aaKnown RBP14.96□□□□□ -0.02
VRK3-212ENST00000596814 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.95□□□□□ -0.02
VRK3-212ENST00000596814 C2CD4DB7Z1M9 353 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 ANHXE9PGG2 379 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 CBX4O00257 560 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 DNALI1O14645 258 aaPredicted RBP14.95□□□□□ -0.02
VRK3-212ENST00000596814 CHADO15335 359 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 CACNG3O60359 315 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 NEBLO76041 1014 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 SEC31AO94979 1220 aaKnown RBP14.95□□□□□ -0.02
VRK3-212ENST00000596814 PEX11BO96011 259 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 JCHAINP01591 159 aa14.95□□□□□ -0.02
VRK3-212ENST00000596814 GLDCP23378 1020 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms