RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PCDHGA12O60330 932 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 IL1BP01584 269 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 CYP1A1P04798 512 aaPredicted RBP12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3HP0C7X1 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 GOT1P17174 413 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 GGCXP38435 758 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 GRK6P43250 576 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 GABRB2P47870 512 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 PPP2CBP62714 309 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 PPP2CAP67775 309 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 CENPCQ03188 943 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 CYP4F3Q08477 520 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 BNIP3Q12983 259 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 ARID5BQ14865 1188 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 COL28A1Q2UY09 1125 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 POM121L1PQ3SYA9 428 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 SFMBT2Q5VUG0 894 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 NAA35Q5VZE5 725 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 RNF219Q5W0B1 726 aaPredicted RBP12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3GQ6DHY5 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 OR6B2Q6IFH4 312 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3CQ6IPX1 549 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 FBXL22Q6P050 247 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 OLFML1Q6UWY5 402 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 DHRS13Q6UX07 377 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 SND1Q7KZF4 910 aaKnown RBP eCLIP12.85□□□□□ -0.35
UPF1-203ENST00000594504 IRF2BP2Q7Z5L9 587 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 ERICH1Q86X53 443 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 TBC1D3Q8IZP1 549 aaPredicted RBP12.85□□□□□ -0.35
UPF1-203ENST00000594504 KDM1BQ8NB78 822 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 OR2T34Q8NGX1 318 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 RNF34Q969K3 372 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 C18orf8Q96DM3 657 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.85□□□□□ -0.35
UPF1-203ENST00000594504 AIPL1Q9NZN9 384 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 ADAMTS1Q9UHI8 967 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 SARDHQ9UL12 918 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 RAXQ9Y2V3 346 aa12.85□□□□□ -0.35
UPF1-203ENST00000594504 C10orf142B7Z368 130 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 HSF2BPO75031 334 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 RTN2O75298 545 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 C5AR1P21730 350 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 CD38P28907 300 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 MAT2AP31153 395 aaKnown RBP12.84□□□□□ -0.35
UPF1-203ENST00000594504 DRD3P35462 400 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SCNN1AP37088 669 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ADPRHP54922 357 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 CDK17Q00537 523 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SLC6A3Q01959 620 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 DNAJC3Q13217 504 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 NME3Q13232 169 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 CAMK2BQ13554 666 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ASIC2Q16515 512 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ACCSLQ4AC99 568 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 CXorf57Q6NSI4 855 aaKnown RBP12.84□□□□□ -0.35
UPF1-203ENST00000594504 FAM183BPQ6ZVS7 135 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SLC26A9Q7LBE3 791 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 C14orf80Q86SX3 495 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ZNF397Q8NF99 534 aaPredicted RBP12.84□□□□□ -0.35
UPF1-203ENST00000594504 FRS2Q8WU20 508 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 CPA5Q8WXQ8 436 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ALG14Q96F25 216 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SERAC1Q96JX3 654 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SLC2A13Q96QE2 648 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 ELF4Q99607 663 aaPredicted RBP12.84□□□□□ -0.35
UPF1-203ENST00000594504 AGPAT1Q99943 283 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 FAM204AQ9H8W3 233 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 DDIT4Q9NX09 232 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 SLC12A6Q9UHW9 1150 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 FZD4Q9ULV1 537 aa12.84□□□□□ -0.35
UPF1-203ENST00000594504 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.84□□□□□ -0.35
UPF1-203ENST00000594504 CFAP47Q6ZTR5 3102 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 BNIP3LO60238 219 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 ITGAVP06756 1048 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 UNGP13051 313 aaPredicted RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 ABCB4P21439 1286 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 MMP8P22894 467 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 NNMTP40261 264 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 PRKCIP41743 596 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 NSFP46459 744 aaKnown RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 CCR5P51681 352 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 PLK1P53350 603 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 ZBED6P86452 979 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SFSWAPQ12872 951 aaKnown RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 AUHQ13825 339 aaKnown RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 CLEC16AQ2KHT3 1053 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SPECC1LQ69YQ0 1117 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SARM1Q6SZW1 724 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 XYLT1Q86Y38 959 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 EID2Q8N6I1 236 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SAP25Q8TEE9 199 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SYN2Q92777 582 aaPredicted RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 RPRD1AQ96P16 312 aaPredicted RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 PCDHB18PQ96TA0 734 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SYT11Q9BT88 431 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 ANP32EQ9BTT0 268 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SEPT11Q9NVA2 429 aaKnown RBP12.83□□□□□ -0.36
UPF1-203ENST00000594504 ARHGAP20Q9P2F6 1191 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 FTSJ1Q9UET6 329 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 VANGL2Q9ULK5 521 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms