RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RSPH9Q9H1X1 276 aaPredicted RBP14.91□□□□□ -0.02
VRK3-206ENST00000594090 ITM2CQ9NQX7 267 aa14.91□□□□□ -0.02
VRK3-206ENST00000594090 TNRC6BQ9UPQ9 1833 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 CBX4O00257 560 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 EEF2KO00418 725 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 MAP3K13O43283 966 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ZMPSTE24O75844 475 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 MT-CO1P00395 513 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 IGLV3-19P01714 112 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 CD6P30203 668 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ACVRL1P37023 503 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ARF5P84085 180 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 RPL6Q02878 288 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 SLC25A11Q02978 314 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 ZBTB16Q05516 673 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ELAVL3Q14576 367 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 DLG2Q15700 870 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ACCSLQ4AC99 568 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 KCNT1Q5JUK3 1230 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 LINGO4Q6UY18 593 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 LPCAT2Q7L5N7 544 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 STK40Q8N2I9 435 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 ATP11CQ8NB49 1132 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 HSPH1Q92598 858 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 PANX2Q96RD6 677 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 MAGEH1Q9H213 219 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 NOL6Q9H6R4 1146 aaKnown RBP14.9□□□□□ -0.02
VRK3-206ENST00000594090 OSGEPQ9NPF4 335 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 THADAQ6YHU6 1953 aa14.9□□□□□ -0.02
VRK3-206ENST00000594090 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 K7ERQ8 282 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 RNASEH1O60930 286 aaKnown RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 LRP3O75074 770 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 PROSCO94903 275 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 DNTTP04053 509 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 GOT1P17174 413 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 FECHP22830 423 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 CDC25BP30305 580 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 SERPINH1P50454 418 aaKnown RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 CLCN6P51797 869 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 ZNF135P52742 658 aaPredicted RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 POLD3Q15054 466 aaPredicted RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 DPYSL2Q16555 572 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 TTC31Q49AM3 519 aaPredicted RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 BOLA3Q53S33 107 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 PPP6R3Q5H9R7 873 aaPredicted RBP14.89□□□□□ -0.03
VRK3-206ENST00000594090 TXNRD3NBQ6F5E7 133 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 RETSATQ6NUM9 610 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 RFX8Q6ZV50 586 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 Q6ZVU0 165 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 TMEFF1Q8IYR6 380 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 TEKT4Q8WW24 435 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 ARRDC1-AS1Q9H2J1 176 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 ZWILCHQ9H900 591 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 PCDHGA5Q9Y5G8 931 aa14.89□□□□□ -0.03
VRK3-206ENST00000594090 FRYLO94915 3013 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 CEP192Q8TEP8 1941 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 CXorf51AA0A1B0GTR3 108 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 SMAD6O43541 496 aaKnown RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 NDUFS2O75306 463 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 LCA5LO95447 670 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 RARAP10276 462 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 TGM1P22735 817 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 OXTRP30559 389 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 MPLP40238 635 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 DHPSP49366 369 aaPredicted RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 SPEM2Q0P670 501 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 CST6Q15828 149 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 SPDYCQ5MJ68 293 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 C22orf39Q6P5X5 142 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 CPNE8Q86YQ8 564 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 MMAAQ8IVH4 418 aaKnown RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 CCDC170Q8IYT3 715 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 UMODL1-AS1Q8N2C9 162 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 SLC35G2Q8TBE7 412 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 RFFLQ8WZ73 363 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 OR8D1Q8WZ84 308 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 HMCESQ96FZ2 354 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 TOE1Q96GM8 510 aaKnown RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 FAM129BQ96TA1 746 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 PABPC3Q9H361 631 aaKnown RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 PARD6AQ9NPB6 346 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.88□□□□□ -0.03
VRK3-206ENST00000594090 DONSONQ9NYP3 566 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 WSB2Q9NYS7 404 aaPredicted RBP14.88□□□□□ -0.03
VRK3-206ENST00000594090 LCMT1Q9UIC8 334 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 INTUQ9ULD6 942 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 HPCAL4Q9UM19 191 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 SCML1Q9UN30 329 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 ABCA7Q8IZY2 2146 aa14.88□□□□□ -0.03
VRK3-206ENST00000594090 OTOGLQ3ZCN5 2332 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 RASA4BC9J798 803 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 H3BRJ5 948 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 DAPK3O43293 454 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 RASA4O43374 803 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 MTA2O94776 668 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 CD160O95971 181 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 MAN1A1P33908 653 aa14.87□□□□□ -0.03
VRK3-206ENST00000594090 CYLC1P35663 651 aaPredicted RBP14.87□□□□□ -0.03
VRK3-206ENST00000594090 PTGER3P43115 390 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms