RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 ACADVLP49748 655 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 METAP1P53582 386 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 PPP2CBP62714 309 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 PPP2CAP67775 309 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 BNIP3Q12983 259 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 DNAJC3Q13217 504 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 ZNF177Q13360 481 aaPredicted RBP10.9□□□□□ -0.66
RFFL-209ENST00000581265 ILKQ13418 452 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 BECN1Q14457 450 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 DLG2Q15700 870 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 C5orf22Q49AR2 442 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 ACCSLQ4AC99 568 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 GJB7Q6PEY0 223 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 GBP6Q6ZN66 633 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 C11orf57Q6ZUT1 292 aaPredicted RBP10.9□□□□□ -0.66
RFFL-209ENST00000581265 KANSL1Q7Z3B3 1105 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 GPR155Q7Z3F1 870 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 TRIM69Q86WT6 500 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 SPATS2Q86XZ4 545 aaKnown RBP10.9□□□□□ -0.66
RFFL-209ENST00000581265 OR52K2Q8NGK3 314 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 SHC3Q92529 594 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 RNF34Q969K3 372 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 RPRD1AQ96P16 312 aaPredicted RBP10.9□□□□□ -0.66
RFFL-209ENST00000581265 APEX2Q9UBZ4 518 aa10.9□□□□□ -0.66
RFFL-209ENST00000581265 SHROOM3Q8TF72 1996 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 SYNJ2BP-COX16A0A087WUM0 186 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 TEX51A0A1B0GUA7 166 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 GTPBP10A4D1E9 387 aaKnown RBP10.89□□□□□ -0.67
RFFL-209ENST00000581265 PRAMEF26H0Y7S4 382 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 PLK4O00444 970 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 RNGTTO60942 597 aaKnown RBP10.89□□□□□ -0.67
RFFL-209ENST00000581265 PAGE1O75459 146 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 CLDN11O75508 207 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 NOS2P35228 1153 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 HNF1BP35680 557 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 USP8P40818 1118 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 NUMBP49757 651 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 SNX16P57768 344 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 CENPCQ03188 943 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 PTK2Q05397 1052 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 CNTN1Q12860 1018 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 STAT4Q14765 748 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 ARHGAP44Q17R89 818 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 AGBL4Q5VU57 503 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 NEK5Q6P3R8 708 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 FBXL19Q6PCT2 694 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 OLFML1Q6UWY5 402 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 SLC26A9Q7LBE3 791 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 CACTIN-AS1Q8N1I8 211 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 SH2D3CQ8N5H7 860 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 ZNF397Q8NF99 534 aaPredicted RBP10.89□□□□□ -0.67
RFFL-209ENST00000581265 BAP1Q92560 729 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 NXPE2Q96DL1 559 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 NOX5Q96PH1 765 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 COX16Q9P0S2 106 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 RWDD2AQ9UIY3 292 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 SLC25A13Q9UJS0 675 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 VPS28Q9UK41 221 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 VANGL2Q9ULK5 521 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 HS3ST2Q9Y278 367 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 HS3ST4Q9Y661 456 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 AK5Q9Y6K8 562 aa10.89□□□□□ -0.67
RFFL-209ENST00000581265 C1QTNF3-AMACRE9PGA6 284 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 GADD45BO75293 160 aaPredicted RBP10.88□□□□□ -0.67
RFFL-209ENST00000581265 GRAP2O75791 330 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 ZNF18P17022 549 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 CKMT2P17540 419 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 PON1P27169 355 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 MAT2AP31153 395 aaKnown RBP10.88□□□□□ -0.67
RFFL-209ENST00000581265 IRAK1P51617 712 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 CDH4P55283 916 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 TAS2R38P59533 333 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 SLC6A3Q01959 620 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 SEMG2Q02383 582 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 APBA1Q02410 837 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 TARDBPQ13148 414 aaKnown RBP eCLIP10.88□□□□□ -0.672e-6■■■■□ 22.6
RFFL-209ENST00000581265 NME3Q13232 169 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 RTP5Q14D33 572 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 EXOC3L4Q17RC7 722 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 SETMARQ53H47 684 aaPredicted RBP10.88□□□□□ -0.67
RFFL-209ENST00000581265 C6orf118Q5T5N4 469 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 OR6B2Q6IFH4 312 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 FAM183BPQ6ZVS7 135 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 Q6ZVU0 165 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 C14orf80Q86SX3 495 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 IRF2BP1Q8IU81 584 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 ZDHHC17Q8IUH5 632 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 NT5C3BQ969T7 300 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 NPY6RQ99463 290 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 NRSN2Q9GZP1 204 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 PREBQ9HCU5 417 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 TMEM51Q9NW97 253 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 RRN3Q9NYV6 651 aa10.88□□□□□ -0.67
RFFL-209ENST00000581265 NAV2Q8IVL1 2488 aa10.87□□□□□ -0.67
RFFL-209ENST00000581265 SMG1Q96Q15 3661 aaKnown RBP10.87□□□□□ -0.67
RFFL-209ENST00000581265 DRGXA6NNA5 263 aa10.87□□□□□ -0.67
RFFL-209ENST00000581265 M0QYT0 321 aa10.87□□□□□ -0.67
RFFL-209ENST00000581265 FOXN3O00409 490 aaPredicted RBP10.87□□□□□ -0.67
RFFL-209ENST00000581265 DAB1O75553 588 aa10.87□□□□□ -0.67
RFFL-209ENST00000581265 MT-CO1P00395 513 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms