RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 GRIA1P42261 906 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 SLCO1A2P46721 670 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 MAPKAPK2P49137 400 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 SGSHP51688 502 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GPX6P59796 221 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ERVK-21P61565 698 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 SPARCL1Q14515 664 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 LONRF1Q17RB8 773 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 SKIDA1Q1XH10 827 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 DNAJC21Q5F1R6 531 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 RABGAP1LQ5R372 815 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 TIGD7Q6NT04 549 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 ZNF354CQ86Y25 554 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 AGGF1Q8N302 714 aaeCLIP10.75□□□□□ -0.69
SS18-217ENST00000580958 SH2D3CQ8N5H7 860 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 MAB21L3Q8N8X9 362 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ATP11CQ8NB49 1132 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ZSCAN18Q8TBC5 510 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 ADAMTS19Q8TE59 1207 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ABHD8Q96I13 439 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 PRICKLE1Q96MT3 831 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 VAT1Q99536 393 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 IL12RB2Q99665 862 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GORASP1Q9BQQ3 440 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 MLPHQ9BV36 600 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 ROPN1BQ9BZX4 212 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 GBA3Q9H227 469 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ATXN3LQ9H3M9 355 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 CERS4Q9HA82 394 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ROPN1Q9HAT0 212 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 XAB2Q9HCS7 855 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 EIF2B3Q9NR50 452 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 HCFC1R1Q9NWW0 138 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GOLGA6AQ9NYA3 693 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 DONSONQ9NYP3 566 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 IPO11Q9UI26 975 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 AGO1Q9UL18 857 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 PCDHA11Q9Y5I1 949 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 TEX264Q9Y6I9 313 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ZFP37Q9Y6Q3 630 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 TRAV19A0A0A6YYK7 116 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 HMGB1P1B2RPK0 211 aaPredicted RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 RAMP2O60895 175 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 HLA-DQB2P05538 268 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CKMP06732 381 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CCNB1P14635 433 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 SSTR1P30872 391 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 OR1E1P30953 314 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 RPS24P62847 133 aaKnown RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 SARNPP82979 210 aaKnown RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 CDK16Q00536 496 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CBLBQ13191 982 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 STAT4Q14765 748 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 POLD3Q15054 466 aaPredicted RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 CCDC38Q502W7 563 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 STXBP5Q5T5C0 1151 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 C6orf118Q5T5N4 469 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 ADGRF1Q5T601 910 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 OTOP3Q7RTS5 596 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CROCCP2Q86T23 111 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 LRRC49Q8IUZ0 686 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 PALM2Q8IXS6 379 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CNTD1Q8N815 330 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 SHKBP1Q8TBC3 707 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 MAML1Q92585 1016 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 CFAP36Q96G28 342 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 DDX50Q9BQ39 737 aaKnown RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 CCDC77Q9BR77 488 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 SP110Q9HB58 689 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 GLOD4Q9HC38 313 aa10.74□□□□□ -0.69
SS18-217ENST00000580958 RBM22Q9NW64 420 aaKnown RBP eCLIP10.74□□□□□ -0.69
SS18-217ENST00000580958 NOVA2Q9UNW9 492 aaKnown RBP10.74□□□□□ -0.69
SS18-217ENST00000580958 EXOC1LA0A1B0GW35 172 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CCDC85CA6NKD9 419 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 H3BNC9 293 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 J3KR12 359 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 PER2O15055 1255 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 RGS16O15492 202 aaPredicted RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 TCEA3O75764 348 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 AP2A1O95782 977 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 LATS1O95835 1130 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CPP00450 1065 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 IVLP07476 585 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 MLNP12872 115 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 TSHRP16473 764 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 PTPN2P17706 415 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 PHBP35232 272 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 ACVRL1P37023 503 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CCR2P41597 374 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 MAGEA3P43357 314 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CDH4P55283 916 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 YBEYP58557 167 aaPredicted RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 SLC7A9P82251 487 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 ZXDBP98169 803 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 OLIG2Q13516 323 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 PRPSAP1Q14558 356 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 ANO4Q32M45 955 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 PARP15Q460N3 678 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 LRRC8BQ6P9F7 803 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CHST9Q7L1S5 443 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms