RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PLEKP08567 350 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-206ENST00000579558 GZMAP12544 262 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 SLC8A1P32418 973 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 GFPT1Q06210 699 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-206ENST00000579558 MAMLD1Q13495 774 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 TDRD12Q587J7 1177 aaKnown RBP24.49■■□□□ 1.51
SHMT1-206ENST00000579558 FAM72AQ5TYM5 149 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 FAM72DQ6L9T8 149 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 ZNF783Q6ZMS7 281 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 SLFN11Q7Z7L1 901 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 FAM72BQ86X60 149 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 DNAAF5Q86Y56 855 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 CPLX3Q8WVH0 158 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 SNX19Q92543 992 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 TBC1D31Q96DN5 1066 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 MAGEB5Q9BZ81 275 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 CAPN10Q9HC96 672 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 HS3ST2Q9Y278 367 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 A0A1W2PP55 124 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 CDX4O14627 284 aaPredicted RBP24.48■■□□□ 1.51
SHMT1-206ENST00000579558 RTN2O75298 545 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 LRIG2O94898 1065 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 ADH1BP00325 375 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 IL1BP01584 269 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 MAPK8P45983 427 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 SCAPQ12770 1279 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 EFHC2Q5JST6 749 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 DAB2IPQ5VWQ8 1189 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 PLEKHA7Q6IQ23 1121 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 Q6ZVU0 165 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 ATP11CQ8NB49 1132 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 OR8D1Q8WZ84 308 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 IQCDQ96DY2 449 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 OMDQ99983 421 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 SPON2Q9BUD6 331 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 TSPY26PQ9H489 355 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 SERGEFQ9UGK8 458 aa24.48■■□□□ 1.51
SHMT1-206ENST00000579558 ADAMTS9Q9P2N4 1935 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 TM4SF5O14894 197 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 RNASEH2AO75792 299 aaKnown RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 MT-CO1P00395 513 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 SRCP12931 536 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 RHOQP17081 205 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 C5AR1P21730 350 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 ATXN3P54252 364 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 ZBED6P86452 979 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 OGDHQ02218 1023 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 GNA12Q03113 381 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 LINGO4Q6UY18 593 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 TMC6Q7Z403 805 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 DSG4Q86SJ6 1040 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 ZCCHC9Q8N567 271 aaKnown RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 SYN2Q92777 582 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 GTPBP2Q9BX10 602 aaKnown RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 NEUROG2Q9H2A3 272 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 ATP13A1Q9HD20 1204 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 EIF2B4Q9UI10 523 aaKnown RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 CAPN11Q9UMQ6 739 aa24.47■■□□□ 1.51
SHMT1-206ENST00000579558 BZW2Q9Y6E2 419 aaKnown RBP24.47■■□□□ 1.51
SHMT1-206ENST00000579558 PCDH15Q96QU1 1955 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 A0A1B0GTW7 788 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 MED19A0JLT2 244 aaPredicted RBP24.46■■□□□ 1.51
SHMT1-206ENST00000579558 CBX4O00257 560 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 BNIP3LO60238 219 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 TPM3P06753 285 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 KCNA4P22459 653 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 GLDCP23378 1020 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 PSMA2P25787 234 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 MAPKAPK2P49137 400 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 UAP1L1Q3KQV9 507 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 PPM1JQ5JR12 505 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 HGSNATQ68CP4 663 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 NLRP14Q86W24 1093 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 PYROXD2Q8N2H3 581 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 HDDC3Q8N4P3 179 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 AADATQ8N5Z0 425 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 ZNF653Q96CK0 615 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 XPO4Q9C0E2 1151 aaKnown RBP24.46■■□□□ 1.51
SHMT1-206ENST00000579558 RETREG1Q9H6L5 497 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 TMEM248Q9NWD8 314 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 CNOT8Q9UFF9 292 aaKnown RBP24.46■■□□□ 1.51
SHMT1-206ENST00000579558 FZD4Q9ULV1 537 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 NEU3Q9UQ49 428 aa24.46■■□□□ 1.51
SHMT1-206ENST00000579558 ZBTB32Q9Y2Y4 487 aaPredicted RBP24.46■■□□□ 1.51
SHMT1-206ENST00000579558 FAM47DPA6NHR8 397 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 K7ERQ8 282 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 ARHGAP33O14559 1287 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 FSBPO95073 299 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 SYPP08247 313 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 GOT1P17174 413 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 L1CAMP32004 1257 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 CLCN6P51797 869 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 AIF1P55008 147 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 RETSATQ6NUM9 610 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 TRIM11Q96F44 468 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP24.45■■□□□ 1.5
SHMT1-206ENST00000579558 NDFIP2Q9NV92 336 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 ADAMTS1Q9UHI8 967 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 DNAI1Q9UI46 699 aa24.45■■□□□ 1.5
SHMT1-206ENST00000579558 FZD10Q9ULW2 581 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms