RNA–Protein interactions for RNA: ENST00000574205.5

CTDNEP1-209, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 1,506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-209ENST00000574205 LRRC19Q9H756 370 aa33.89■■■■□ 3.02
CTDNEP1-209ENST00000574205 POLMQ9NP87 494 aaPredicted RBP33.89■■■■□ 3.02
CTDNEP1-209ENST00000574205 HPCAL4Q9UM19 191 aa33.89■■■■□ 3.02
CTDNEP1-209ENST00000574205 CXorf51AA0A1B0GTR3 108 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZNF487B1APH4 448 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 RASA4BC9J798 803 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 RASA4O43374 803 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 KRT1P04264 644 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 STK19P49842 368 aaPredicted RBP33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 STARD3Q14849 445 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 LZTFL1Q9NQ48 299 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 SLCO3A1Q9UIG8 710 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 HS3ST2Q9Y278 367 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 CAPN6Q9Y6Q1 641 aa33.88■■■■□ 3.01
CTDNEP1-209ENST00000574205 WDFY4Q6ZS81 3184 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 A0A1W2PQF6 199 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 EPHX1P07099 455 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 CTNNA1P35221 906 aaKnown RBP33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 CSTF1Q05048 431 aaKnown RBP33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 ANKRD20A8PQ5CZ79 823 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 RETSATQ6NUM9 610 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 NPWQ8N729 165 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 TSTD1Q8NFU3 115 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 HHIPQ96QV1 700 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 KCNH6Q9H252 994 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 RAD54BQ9Y620 910 aa33.87■■■■□ 3.01
CTDNEP1-209ENST00000574205 SYNCRIPO60506 623 aaKnown RBP33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZMPSTE24O75844 475 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 HLA-EP13747 358 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 GLDCP23378 1020 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 HOXA6P31267 233 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 AFMIDQ63HM1 303 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 TSSK4Q6SA08 328 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 CELF6Q96J87 481 aaKnown RBP33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 CD248Q9HCU0 757 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 ETNK2Q9NVF9 386 aa33.86■■■■□ 3.01
CTDNEP1-209ENST00000574205 C3orf70A6NLC5 250 aaPredicted RBP33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 TDGF1P13385 188 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 COL9A1P20849 921 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 SERPINB6P35237 376 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 NT5DC3Q86UY8 548 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZNF354CQ86Y25 554 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 KATNAL2Q8IYT4 538 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 SH2D3CQ8N5H7 860 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 PCDH19Q8TAB3 1148 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 HMCESQ96FZ2 354 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 SUN2Q9UH99 717 aa33.85■■■■□ 3.01
CTDNEP1-209ENST00000574205 KDELR3O43731 214 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 APBB3O95704 486 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ARF5P84085 180 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 SLC20A2Q08357 652 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 SERINC3Q13530 473 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 HNRNPA1L2Q32P51 320 aaKnown RBP33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZNF528Q3MIS6 628 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 KIAA1211LQ6NV74 962 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 PEX26Q7Z412 305 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ARHGAP12Q8IWW6 846 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZNF366Q8N895 744 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 KRT35Q92764 455 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 SLC39A8Q9C0K1 460 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 AMFRQ9UKV5 643 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 PCDHA3Q9Y5H8 950 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 CCDC66A2RUB6 948 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ARHGAP42A6NI28 874 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 ALDH1A2O94788 518 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 MARCKSL1P49006 195 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 LINGO4Q6UY18 593 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 RNF25Q96BH1 459 aaPredicted RBP33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 RNF157Q96PX1 679 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 MFHAS1Q9Y4C4 1052 aa33.84■■■■□ 3.01
CTDNEP1-209ENST00000574205 TCRBV21S2A2A0A5A6 115 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZSCAN5CA6NGD5 496 aaPredicted RBP33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 TTC34A8MYJ7 566 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 ATP9BO43861 1147 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 MT-CO1P00395 513 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 SRCP12931 536 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 CTNNA2P26232 953 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 CLCN6P51797 869 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 GEMIN4P57678 1058 aaKnown RBP33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 ATP11CQ8NB49 1132 aa33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 FAM126AQ9BYI3 521 aaPredicted RBP33.83■■■■□ 3.01
CTDNEP1-209ENST00000574205 ZRANB2O95218 330 aaKnown RBP eCLIP33.82■■■■□ 3
CTDNEP1-209ENST00000574205 NRLP54845 237 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 CAMK2GQ13555 558 aaPredicted RBP33.82■■■■□ 3
CTDNEP1-209ENST00000574205 NCBP2-AS2Q69YL0 99 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 PRSS33Q8NF86 280 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 FRS2Q8WU20 508 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 HCN4Q9Y3Q4 1203 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 NYNRINQ9P2P1 1898 aaKnown RBP33.82■■■■□ 3
CTDNEP1-209ENST00000574205 CACNA1HO95180 2353 aa33.82■■■■□ 3
CTDNEP1-209ENST00000574205 SP9P0CG40 484 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 SERPINH1P50454 418 aaKnown RBP33.81■■■■□ 3
CTDNEP1-209ENST00000574205 PAPOLAP51003 745 aaKnown RBP33.81■■■■□ 3
CTDNEP1-209ENST00000574205 PAFAH1B3Q15102 231 aaKnown RBP33.81■■■■□ 3
CTDNEP1-209ENST00000574205 ACCSLQ4AC99 568 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 MFSD7Q6UXD7 560 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 RASSF3Q86WH2 238 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 RCOR2Q8IZ40 523 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 PQLC3Q8N755 202 aa33.81■■■■□ 3
CTDNEP1-209ENST00000574205 EXD1Q8NHP7 514 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms