RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GPR174Q9BXC1 333 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 EDEM3Q9BZQ6 932 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 MUC3BQ9H195 1237 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 SMOC1Q9H4F8 434 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 USP36Q9P275 1121 aaKnown RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 EVLQ9UI08 416 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 VPS28Q9UK41 221 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 SCML1Q9UN30 329 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 ERVW-1Q9UQF0 538 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 IGF2RP11717 2491 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TMCO5BA8MYB1 307 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 E9PAM4 449 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 SRGAP2O75044 1071 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 SIN3BO75182 1162 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 CFIP05156 583 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TFE3P19532 575 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 ITPKAP23677 461 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 CTSOP43234 321 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 PTPN9P43378 593 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TPMTP51580 245 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 PLK1P53350 603 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 UBASH3AP57075 661 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 RPS14P62263 151 aaKnown RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 SHC2P98077 582 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 FANCCQ00597 558 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 KLHL30Q0D2K2 578 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 ELAVL3Q14576 367 aaKnown RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 NR1I3Q14994 352 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 DUOXA1Q1HG43 343 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 ZSCAN23Q3MJ62 389 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 CCDC14Q49A88 953 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 C5orf22Q49AR2 442 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 ACCSLQ4AC99 568 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 N4BP2L1Q5TBK1 243 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 STPG1Q5TH74 334 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 DAB2IPQ5VWQ8 1189 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TCEAL6Q6IPX3 200 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 DSG4Q86SJ6 1040 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 C14orf80Q86SX3 495 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 SETD3Q86TU7 594 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 FAM124AQ86V42 546 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 LUZP1Q86V48 1076 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 VPS36Q86VN1 386 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 APCDD1Q8J025 514 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 CADM4Q8NFZ8 388 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 JOSD2Q8TAC2 188 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 FAM172AQ8WUF8 416 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 BAP1Q92560 729 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TCEAL3Q969E4 200 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 MRGPRX3Q96LB0 322 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 CCDC114Q96M63 670 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 NAP1L5Q96NT1 182 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 OMDQ99983 421 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 C2orf49Q9BVC5 232 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 ZYG11BQ9C0D3 744 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 BTBD1Q9H0C5 482 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 TMEM9BQ9NQ34 198 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 PRSS16Q9NQE7 514 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 WSB2Q9NYS7 404 aaPredicted RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 PILRBQ9UKJ0 227 aa8.32□□□□□ -1.08
VPS53-214ENST00000572607 INTS6Q9UL03 887 aaKnown RBP8.32□□□□□ -1.08
VPS53-214ENST00000572607 ITIH6Q6UXX5 1313 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 FASNP49327 2511 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 NUP205Q92621 2012 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 LNP1A1A4G5 178 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 C2CD4BA6NLJ0 364 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SIGLEC16A6NMB1 481 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 DRGXA6NNA5 263 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 TTC34A8MYJ7 566 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 CNTN5O94779 1100 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 ENDOD1O94919 500 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 GJB6O95452 261 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 IGLV3-19P01714 112 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SYPP08247 313 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RRM1P23921 792 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 MZF1P28698 734 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 OR1E1P30953 314 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RFC1P35251 1148 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 ETFBP38117 255 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 PSMD8P48556 350 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 STK19P49842 368 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 GFPT1Q06210 699 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 PTP4A2Q12974 167 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 ARID5BQ14865 1188 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 CST6Q15828 149 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 C15orf59Q2T9L4 293 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 ALFQ53S48 1182 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 TDRD12Q587J7 1177 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 FIGNQ5HY92 759 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 EFHC2Q5JST6 749 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 DCAF12L1Q5VU92 463 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 PEAR1Q5VY43 1037 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 DESI1Q6ICB0 168 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 CXorf57Q6NSI4 855 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 TRNP1Q6NT89 227 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RWDD4Q6NW29 188 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 SCYL2Q6P3W7 929 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SLC23A3Q6PIS1 610 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 ZNF783Q6ZMS7 281 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 USP30Q70CQ3 517 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms