RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CUL4AQ13619 759 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ITGA9Q13797 1035 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CYLC2Q14093 348 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 PTPAQ15257 358 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CYTH1Q15438 398 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NFE2Q16621 373 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 ME3Q16798 604 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RILPL1Q5EBL4 403 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ANO1Q5XXA6 986 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SNRNP48Q6IEG0 339 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 ZNF529Q6P280 563 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM122CQ6P4D5 195 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM171BQ6P995 826 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RFPL4BQ6ZWI9 263 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 USP50Q70EL3 339 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 MED25Q71SY5 747 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MIGA2Q7L4E1 593 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 TRPM8Q7Z2W7 1104 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ZNF572Q7Z3I7 529 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 CACNA2D4Q7Z3S7 1137 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 UBE3BQ7Z3V4 1068 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ITIH5Q86UX2 942 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NLRP14Q86W24 1093 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 TMTC1Q8IUR5 882 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SYT12Q8IV01 421 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CROCCP3Q8IVE0 287 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SLC44A2Q8IWA5 706 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 OR8H2Q8N162 312 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ARHGAP24Q8N264 748 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ZGPATQ8N5A5 531 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM133AQ8N9E0 248 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MLKLQ8NB16 471 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 DDHD1Q8NEL9 900 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 C1orf162Q8NEQ5 155 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 TTLQ8NG68 377 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 OR10Z1Q8NGY1 313 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 LILRB4Q8NHJ6 448 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RUFY2Q8WXA3 655 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CCT6BQ92526 530 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 LARP4BQ92615 738 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 ANKS1AQ92625 1134 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 TSR2Q969E8 191 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 RAB24Q969Q5 203 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 IQCDQ96DY2 449 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 C11orf24Q96F05 449 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 CYFIP2Q96F07 1278 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CDCA5Q96FF9 252 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SLC47A1Q96FL8 570 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ARL5BQ96KC2 179 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FAM167AQ96KS9 214 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NLRP4Q96MN2 994 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RPRD1AQ96P16 312 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 SECISBP2Q96T21 854 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 COQ7Q99807 217 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CTRCQ99895 268 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 C7orf25Q9BPX7 421 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RIOK1Q9BRS2 568 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 MENTQ9BUN1 341 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 FTOQ9C0B1 505 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS35-208ENST00000568612 ADNPQ9H2P0 1102 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RAD21L1Q9H4I0 556 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ACAD9Q9H845 621 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 MANSC1Q9H8J5 431 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 UCK1Q9HA47 277 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NEK6Q9HC98 313 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 STARD7Q9NQZ5 370 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 PAQR5Q9NXK6 330 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 STK32BQ9NY57 414 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 GGA3Q9NZ52 723 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 C9orf78Q9NZ63 289 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 GPRC5BQ9NZH0 403 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CTTNBP2NLQ9P2B4 639 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 LARSQ9P2J5 1176 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 MALT1Q9UDY8 824 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ASIC3Q9UHC3 531 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 SLC7A8Q9UHI5 535 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ANAPC5Q9UJX4 755 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ACTL7AQ9Y615 435 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 TTC21AQ8NDW8 1320 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ZNF335Q9H4Z2 1342 aaPredicted RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 TUBGCP6Q96RT7 1819 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 NUP155O75694 1391 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 CPDO75976 1380 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 ABCC12Q96J65 1359 aa3.37□□□□□ -1.87
VPS35-208ENST00000568612 RNF17Q9BXT8 1623 aaKnown RBP3.37□□□□□ -1.87
VPS35-208ENST00000568612 MYH7P12883 1935 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAGI1Q96QZ7 1491 aaPredicted RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 HMGXB3Q12766 1538 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SYNJ2BP-COX16A0A087WUM0 186 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8QA0A0J9YX86 632 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SMIM31A0A1B0GVY4 71 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ANO9A1A5B4 782 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8OA6NCC3 632 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAGEA13PA6NCF6 341 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 A6NCN8 305 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 AHRRA9YTQ3 701 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ALG1L2C9J202 215 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 E9PBE3 544 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 F8W810 466 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8NF8WBI6 632 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms