RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 STK19P49842 368 aaPredicted RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 CLCN6P51797 869 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 ELAVL3Q14576 367 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 ACAP1Q15027 740 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 RAB6CQ53S08 254 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 C9orf64Q5T6V5 341 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 MANEALQ5VSG8 457 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 RETSATQ6NUM9 610 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 USP30Q70CQ3 517 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 SH2D3CQ8N5H7 860 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 CCDC185Q8N715 623 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 OR8K1Q8NGG5 319 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 OR52K2Q8NGK3 314 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 OR8D1Q8WZ84 308 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 PTPRN2Q92932 1015 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 EIF3CQ99613 913 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 EPAS1Q99814 870 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 NUSAP1Q9BXS6 441 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 BTBD1Q9H0C5 482 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 RAB6CQ9H0N0 254 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 SGK2Q9HBY8 427 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 TMEM248Q9NWD8 314 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 MYO1AQ9UBC5 1043 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 SUSD2Q9UGT4 822 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 EVLQ9UI08 416 aaPredicted RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 ANGPTL2Q9UKU9 493 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 FZD10Q9ULW2 581 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 HS3ST2Q9Y278 367 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 CNOT1A5YKK6 2376 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 USP24Q9UPU5 2620 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 ADAMTS9Q9P2N4 1935 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 ALOX15BO15296 676 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 ATMINO43313 823 aaPredicted RBP13.72□□□□□ -0.21
CLK3-216ENST00000564468 LRIG2O94898 1065 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 GNSP15586 552 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 KCNA4P22459 653 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 PTGER3P43115 390 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 GEMIN4P57678 1058 aaKnown RBP13.72□□□□□ -0.21
CLK3-216ENST00000564468 GNA12Q03113 381 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 SF3A2Q15428 464 aaKnown RBP13.72□□□□□ -0.21
CLK3-216ENST00000564468 DLG2Q15700 870 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 CST6Q15828 149 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 CCDC6Q16204 474 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 DUOXA1Q1HG43 343 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 FAM46CQ5VWP2 391 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 ALKBH5Q6P6C2 394 aaKnown RBP13.72□□□□□ -0.21
CLK3-216ENST00000564468 CACUL1Q86Y37 369 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 VSTM4Q8IW00 320 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 RGL4Q8IZJ4 473 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 ATP11CQ8NB49 1132 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 GANCQ8TET4 914 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 HSPA12BQ96MM6 686 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 SPON2Q9BUD6 331 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 GPR174Q9BXC1 333 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 MAGEH1Q9H213 219 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 PABPC3Q9H361 631 aaKnown RBP13.72□□□□□ -0.21
CLK3-216ENST00000564468 CATSPERBQ9H7T0 1116 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 ATP13A1Q9HD20 1204 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 VPS51Q9UID3 782 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 PILRBQ9UKJ0 227 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 HPCAL4Q9UM19 191 aa13.72□□□□□ -0.21
CLK3-216ENST00000564468 A0A0D9SEW6 157 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 METTL12A8MUP2 240 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 MEI4A8MW99 385 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 C1QTNF3-AMACRE9PGA6 284 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 FGF10O15520 208 aaPredicted RBP13.71□□□□□ -0.21
CLK3-216ENST00000564468 C5AR1P21730 350 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 ITPKAP23677 461 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 EPHB2P29323 1055 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 ZNF135P52742 658 aaPredicted RBP13.71□□□□□ -0.21
CLK3-216ENST00000564468 LIMK1P53667 647 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 OGDHQ02218 1023 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 CCDC122Q5T0U0 273 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 ERMARDQ5T6L9 678 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 PEAR1Q5VY43 1037 aaPredicted RBP13.71□□□□□ -0.21
CLK3-216ENST00000564468 FAM124AQ86V42 546 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 PSTKQ8IV42 348 aaKnown RBP13.71□□□□□ -0.21
CLK3-216ENST00000564468 MMAAQ8IVH4 418 aaKnown RBP13.71□□□□□ -0.21
CLK3-216ENST00000564468 SLC41A1Q8IVJ1 513 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 STK40Q8N2I9 435 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 DEFB119Q8N690 84 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 FRS2Q8WU20 508 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 FAM129BQ96TA1 746 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 PSMB7Q99436 277 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 OMDQ99983 421 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 DEF6Q9H4E7 631 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 MTG2Q9H4K7 406 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 CD93Q9NPY3 652 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 FBXL12Q9NXK8 326 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 ZNF212Q9UDV6 495 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 ATRXP46100 2492 aa13.71□□□□□ -0.21
CLK3-216ENST00000564468 A0A087X0T9 212 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 SSU72P8A0A1W2PR75 194 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 FAM72CH0Y354 149 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CBX4O00257 560 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 MCF2LO15068 1137 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 MID1O15344 667 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 CREB3O43889 395 aa13.7□□□□□ -0.22
CLK3-216ENST00000564468 PRPSAP2O60256 369 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms