RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SH3D19Q5HYK7 790 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 RARS2Q5T160 578 aaKnown RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 SYPL2Q5VXT5 272 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SEL1L3Q68CR1 1132 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 ZSCAN18Q8TBC5 510 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 TMA16Q96EY4 203 aaKnown RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 SCYL1Q96KG9 808 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 BFARQ9NZS9 450 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 C6orf203Q9P0P8 240 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 ZDHHC2Q9UIJ5 367 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 BPTFQ12830 3046 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SMIM31A0A1B0GVY4 71 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 TMEM233B4DJY2 109 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 M0QYT0 321 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 USP2O75604 605 aaPredicted RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 LGALS2P05162 132 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 TFEBP19484 476 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ACAT1P24752 427 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 TKTP29401 623 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 MAGEA12P43365 314 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 GLUD2P49448 558 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 CDKL1Q00532 357 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ZNF460Q14592 562 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ZNF423Q2M1K9 1284 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 KCNMB4Q86W47 210 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 MARVELD2Q8N4S9 558 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 VPS39Q96JC1 886 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 SERPINI1Q99574 410 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 PKP2Q99959 881 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 EIF2AQ9BY44 585 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 GNEQ9Y223 722 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 A0A1B0GTW7 788 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 CLDN5O00501 218 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 HDAC3O15379 428 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ZBTB24O43167 697 aaPredicted RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 AKAP5P24588 427 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 PTPN3P26045 913 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 INHBCP55103 352 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 MAP7Q14244 749 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 GRM3Q14832 879 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 OTUD1Q5VV17 481 aaPredicted RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 C16orf89Q6UX73 402 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 CLEC14AQ86T13 490 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 PIGZQ86VD9 579 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 APOBEC3FQ8IUX4 373 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 AFG1LQ8WV93 481 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 DGCR14Q96DF8 476 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 NPAS2Q99743 824 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 OXSMQ9NWU1 459 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 GTF2IRD1Q9UHL9 959 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 FIS1Q9Y3D6 152 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 SSC5DA1L4H1 1573 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 hCG_2014768A0A024R1R8 64 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 EEF2KO00418 725 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 STAU1O95793 577 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 ARSAP15289 507 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 GNL1P36915 607 aaPredicted RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 RPL5P46777 297 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 RPL14P50914 215 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 MYBPC1Q00872 1141 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ADGRE1Q14246 886 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 KCTD2Q14681 263 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 SLC25A52Q3SY17 297 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 PIGGQ5H8A4 983 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 METTL21CQ5VZV1 264 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 KLHDC10Q6PID8 442 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 STRADAQ7RTN6 431 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 KCTD4Q8WVF5 259 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 SREK1Q8WXA9 508 aaKnown RBP13.45□□□□□ -0.26
CLN3-210ENST00000563874 OTUD5Q96G74 571 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 WDR41Q9HAD4 459 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 GOLGA2P5Q9HBQ8 144 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 KLK14Q9P0G3 267 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 RIMS3Q9UJD0 308 aa13.45□□□□□ -0.26
CLN3-210ENST00000563874 ZNF638Q14966 1978 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 TMEM114B3SHH9 223 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 SPTLC1O15269 473 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 GRID2O43424 1007 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 DENRO43583 198 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 CNMDO75829 334 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 BEST1O76090 585 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 HFE2Q6ZVN8 426 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 TMEM135Q86UB9 458 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 PSTKQ8IV42 348 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 CCNYL1Q8N7R7 359 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 RNF169Q8NCN4 708 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 KBTBD7Q8WVZ9 684 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 KLHL32Q96NJ5 620 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 APBA2Q99767 749 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 OMDQ99983 421 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 MAF1Q9H063 256 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 PIGVQ9NUD9 493 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 IGSF9Q9P2J2 1179 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 CITO14578 2027 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 SBK3P0C264 359 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 ERCC2P18074 760 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 NELFEP18615 380 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 NMBRP28336 390 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 ART3Q13508 389 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 NRF1Q16656 503 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms