RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SPAG5Q96R06 1193 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 IMPG2Q9BZV3 1241 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 ZSCAN16Q9H4T2 348 aaPredicted RBP10.68□□□□□ -0.7
SF3B3-204ENST00000563739 LRRC4Q9HBW1 653 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 RAB20Q9NX57 234 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 NLGN3Q9NZ94 848 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 COQ4Q9Y3A0 265 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 LRRK1Q38SD2 2015 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 DOCK4Q8N1I0 1966 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 CHD5Q8TDI0 1954 aa10.68□□□□□ -0.7
SF3B3-204ENST00000563739 A0A1W2PQU0 124 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CLEC18AA5D8T8 446 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SCAMP1O15126 338 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SPINT1O43278 529 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 ATP9BO43861 1147 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 RNGTTO60942 597 aaKnown RBP10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SETSIPP0DME0 302 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 TACR2P21452 398 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SLC11A2P49281 568 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CENPCQ03188 943 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 NNTQ13423 1086 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CUL2Q13617 745 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CDH18Q13634 790 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 FZD2Q14332 565 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SGO2Q562F6 1265 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 SEL1L3Q68CR1 1132 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 OR6B2Q6IFH4 312 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CRTC1Q6UUV9 634 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CLEC18BQ6UXF7 455 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 PRICKLE2Q7Z3G6 844 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 PRPF39Q86UA1 669 aaKnown RBP10.67□□□□□ -0.7
SF3B3-204ENST00000563739 LGI2Q8N0V4 545 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 LSMEM2Q8N112 164 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 CLEC18CQ8NCF0 446 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 FBXL13Q8NEE6 735 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 ZNF548Q8NEK5 533 aaPredicted RBP10.67□□□□□ -0.7
SF3B3-204ENST00000563739 IRGQQ8WZA9 623 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 KLHDC7BQ96G42 594 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 PSMB7Q99436 277 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 OSBPL2Q9H1P3 480 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 PREBQ9HCU5 417 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 THSD1Q9NS62 852 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 EXOC1Q9NV70 894 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 NAALADL1Q9UQQ1 740 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 HPSEQ9Y251 543 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 TLR6Q9Y2C9 796 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 FRMD4BQ9Y2L6 1034 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 PCDHGA8Q9Y5G5 932 aa10.67□□□□□ -0.7
SF3B3-204ENST00000563739 ITPR3Q14573 2671 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 POM121BA6NF01 834 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 I6L893 689 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 SLC31A1O15431 190 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 RHOBTB3O94955 611 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 MOCS2O96007 188 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 GTF2H1P32780 548 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 NUDT1P36639 197 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 TGIF1Q15583 401 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 SETMARQ53H47 684 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 B3GNT8Q7Z7M8 397 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 UNC45BQ8IWX7 931 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 CCAR2Q8N163 923 aaKnown RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 SIX6OS1Q8N1H7 587 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 ZNF557Q8N988 423 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 MAPK15Q8TD08 544 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 HTR3CQ8WXA8 447 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 SNX21Q969T3 373 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 IPO9Q96P70 1041 aaKnown RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 CALN1Q9BXU9 219 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 TCEAL2Q9H3H9 227 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 MAPK8IP1Q9UQF2 711 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 ZFC3H1O60293 1989 aaKnown RBP10.66□□□□□ -0.7
SF3B3-204ENST00000563739 SDK2Q58EX2 2172 aa10.66□□□□□ -0.7
SF3B3-204ENST00000563739 EME2A4GXA9 379 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 K7ELQ4 463 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 MCF2LO15068 1137 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 SUV39H1O43463 412 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 CALUO43852 315 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 ZNF821O75541 412 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 MT-CO1P00395 513 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 VDRP11473 427 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 CD19P15391 556 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 NME1P15531 152 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 BRD2P25440 801 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 GGCXP38435 758 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 SFSWAPQ12872 951 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 EIF2B5Q13144 721 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 STAT4Q14765 748 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 CDKN3Q16667 212 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 ZC3H12AQ5D1E8 599 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 OTUD1Q5VV17 481 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 EFL1Q7Z2Z2 1120 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 HORMAD1Q86X24 394 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 CHSY1Q86X52 802 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 SLC35F3Q8IY50 421 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 TTC39CQ8N584 583 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 SH2D3CQ8N5H7 860 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 CHST14Q8NCH0 376 aa10.65□□□□□ -0.7
SF3B3-204ENST00000563739 INTS4Q96HW7 963 aaKnown RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 KLF6Q99612 283 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-204ENST00000563739 RABGEF1Q9UJ41 708 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms