RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 POLR1DQ9Y2S0 133 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 LTA4HP09960 611 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 ATP5F1P24539 256 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 RBL1P28749 1068 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 RPL5P46777 297 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 NFIAQ12857 509 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 DSG4Q86SJ6 1040 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 OSMRQ99650 979 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 UNKQ9C0B0 810 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 ENTPD4Q9Y227 616 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 TNFRSF21O75509 655 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 SLITRK3O94933 977 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 HOXB6P17509 224 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 KDELR1P24390 212 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 RCVRNP35243 200 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 SMIM11AP58511 58 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 BCL2L1Q07817 233 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 TAF5Q15542 800 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 NEK5Q6P3R8 708 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 PEG10Q86TG7 708 aaKnown RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 MAP4K3Q8IVH8 894 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 FBXO16Q8IX29 292 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 IZUMO1Q8IYV9 350 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 BHLHE22Q8NFJ8 381 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 KBTBD8Q8NFY9 601 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZSCAN18Q8TBC5 510 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 RTFDC1Q9BY42 306 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 CEP41Q9BYV8 373 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 KCNQ5Q9NR82 932 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 SNTG2Q9NY99 539 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 LEF1Q9UJU2 399 aaPredicted RBP13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 CROCC2H7BZ55 1655 aa13.4□□□□□ -0.26
CSPG4P11-201ENST00000560634 A0A0A0MRY4 1105 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 NDUFB5O43674 189 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 KLHL18O94889 574 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 FGFR2P21802 821 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PTSQ03393 145 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PLD1Q13393 1074 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SQLEQ14534 574 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ARMC12Q5T9G4 340 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZCCHC23Q6ZST2 131 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PIWIL4Q7Z3Z4 852 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 TFAP2DQ7Z6R9 452 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZNF410Q86VK4 478 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 DEPDC4Q8N2C3 294 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZKSCAN4Q969J2 545 aaPredicted RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MYLPFQ96A32 169 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SPATA13Q96N96 652 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CHST7Q9NS84 486 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ETNK2Q9NVF9 386 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PCYOX1Q9UHG3 505 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CEMIPQ8WUJ3 1361 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 FGF10O15520 208 aaPredicted RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SNRPB2P08579 225 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ANXA5P08758 320 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 FGFR1P11362 822 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CCDC130P13994 396 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ITGB6P18564 788 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 AKAP5P24588 427 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CCT3P49368 545 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 NAGLUP54802 743 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PPIL2Q13356 520 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 KCTD21Q4G0X4 260 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 OTOP1Q7RTM1 612 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 TSPAN14Q8NG11 270 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 WDR60Q8WVS4 1066 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ATL1Q8WXF7 558 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MTF2Q9Y483 593 aaPredicted RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 AP5Z1O43299 807 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 LTFP02788 710 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 UQCRBP14927 111 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 NOS2P35228 1153 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 RPL3P39023 403 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 OAZ1P54368 228 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PKNOX1P55347 436 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SGCGQ13326 291 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PGM5Q15124 567 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZSWIM7Q19AV6 140 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 TSHZ1Q6ZSZ6 1077 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 FAM20CQ8IXL6 584 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 GRIP2Q9C0E4 1043 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PIGUQ9H490 435 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 XPNPEP3Q9NQH7 507 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ARL15Q9NXU5 204 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZNF232Q9UNY5 417 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SIK3Q9Y2K2 1263 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CRYL1Q9Y2S2 319 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PPP2R3BQ9Y5P8 575 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 RNF17Q9BXT8 1623 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 INO80Q9ULG1 1556 aaPredicted RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CCDC189A1A4V9 331 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SGTAO43765 313 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PCDH8O95206 1070 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 OR6A2O95222 327 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 VIL1P09327 827 aaKnown RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 COX7A2P14406 83 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MMP13P45452 471 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MAPKAPK2P49137 400 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 SLC20A2Q08357 652 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms