RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 A0A1W2PQU0 124 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 CPED1A4D0V7 1026 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 SCAMP1O15126 338 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 ALOX15BO15296 676 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 KRT10P13645 584 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 HNRNPA2B1P22626 353 aaKnown RBP18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 TBXAS1P24557 533 aaPredicted RBP18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 HNRNPKP61978 463 aaKnown RBP eCLIP18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 DCAF17Q5H9S7 520 aaPredicted RBP18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 C6orf132Q5T0Z8 1188 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 NEK5Q6P3R8 708 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 OR13H1Q8NG92 308 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 FRS2Q8WU20 508 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 IFT43Q96FT9 208 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 SLC39A13Q96H72 371 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 BTN2A3PQ96KV6 586 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 TRIM62Q9BVG3 475 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 PPM1HQ9ULR3 514 aa18.33■□□□□ 0.52
TSPAN3-208ENST00000560514 K7ESM1 405 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 MCF2LO15068 1137 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 CETN3O15182 167 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 SART1O43290 800 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 RHOBTB3O94955 611 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 PAEPP09466 180 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 STILQ15468 1287 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 DLG2Q15700 870 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 TTC39BQ5VTQ0 682 aaPredicted RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 ZCCHC8Q6NZY4 707 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 TMEM270Q6UE05 265 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 RBM44Q6ZP01 1051 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 DCP2Q8IU60 420 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 CCAR2Q8N163 923 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 GUF1Q8N442 669 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 ATP6V0D2Q8N8Y2 350 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 TPCN2Q8NHX9 752 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 FAM174AQ8TBP5 190 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 ATXN7L3BQ96GX2 97 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 ARHGAP9Q9BRR9 750 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 TRIM4Q9C037 500 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 FZD3Q9NPG1 666 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 XPO7Q9UIA9 1087 aaKnown RBP18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 NAALADL1Q9UQQ1 740 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 SSUH2Q9Y2M2 353 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 PCDHGA8Q9Y5G5 932 aa18.32■□□□□ 0.52
TSPAN3-208ENST00000560514 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 H3BM21 787 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 RIOK3O14730 519 aaKnown RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 NEBLO76041 1014 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 PCDH8O95206 1070 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 GIMD1P0DJR0 217 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 TGM2P21980 687 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 PLK1P53350 603 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 LRMPQ12912 555 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 ZNF177Q13360 481 aaPredicted RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 CNGA2Q16280 664 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 CDKN3Q16667 212 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 EDRF1Q3B7T1 1238 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 ZC3H12AQ5D1E8 599 aaKnown RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 ZNF542PQ5EBM4 170 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 RABGAP1LQ5R372 815 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 Q6ZVU0 165 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 EFL1Q7Z2Z2 1120 aaKnown RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 PTAR1Q7Z6K3 402 aaPredicted RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 TAC4Q86UU9 113 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 HORMAD1Q86X24 394 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 CCDC114Q96M63 670 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 CCNL2Q96S94 520 aaPredicted RBP18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 ST7Q9NRC1 585 aa18.31■□□□□ 0.52
TSPAN3-208ENST00000560514 TCAF2A6NFQ2 919 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 A6NNZ2 444 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 KPNA3O00505 521 aaPredicted RBP18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 ATP9BO43861 1147 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 LZTS3O60299 673 aaPredicted RBP18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 GABBR2O75899 941 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 PFKFB1P16118 471 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 CLDN2P57739 230 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 TAS2R38P59533 333 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 ZNF284Q2VY69 593 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 CBWD6Q4V339 395 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 CBWD3Q5JTY5 395 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 CBWD5Q5RIA9 395 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 Q6ZSR6 202 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 WDR36Q8NI36 951 aaKnown RBP18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 TFAP2BQ92481 460 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 ARRDC3Q96B67 414 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 IPO11Q9UI26 975 aaKnown RBP18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 PCDHB4Q9Y5E5 795 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 ENTPD2Q9Y5L3 495 aa18.3■□□□□ 0.52
TSPAN3-208ENST00000560514 A0A1B0GVL5 298 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 TNFSF15O95150 251 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 FYNP06241 537 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 CMA1P23946 247 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 MLLT3P42568 568 aaPredicted RBP18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 VASPP50552 380 aaPredicted RBP18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 SKOR1P84550 965 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 PIP5KL1Q5T9C9 394 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 XKR5Q6UX68 686 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 ATG14Q6ZNE5 492 aa18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 CIR1Q86X95 450 aaPredicted RBP18.29■□□□□ 0.52
TSPAN3-208ENST00000560514 VPS28Q9UK41 221 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms