RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 ACSL1P33121 698 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 BCAT1P54687 386 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 PTPRNQ16849 979 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 MEI1Q5TIA1 1274 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 ADIPOR2Q86V24 386 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 FAM124AQ86V42 546 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 MNS1Q8NEH6 495 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 SETD7Q8WTS6 366 aaKnown RBP14.46□□□□□ -0.09
LDLR-213ENST00000560502 C6orf106Q9H6K1 298 aaPredicted RBP14.46□□□□□ -0.09
LDLR-213ENST00000560502 CTTNBP2NLQ9P2B4 639 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.46□□□□□ -0.09
LDLR-213ENST00000560502 YJEFN3A6XGL0 299 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 MIF4GDA9UHW6 222 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 E7ENQ6 273 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 O00370 1275 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ATP1A1P05023 1023 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 ATXN1LP0C7T5 689 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 HARS2P49590 506 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 SGSHP51688 502 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 AFF3P51826 1226 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 SLC8A3P57103 927 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 SNX16P57768 344 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ADIGQ0VDE8 80 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 BST2Q10589 180 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 KIF19Q2TAC6 998 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 PKDCCQ504Y2 493 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ADGRF1Q5T601 910 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 BSPRYQ5W0U4 402 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 MSANTD2Q6P1R3 559 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 LCLAT1Q6UWP7 414 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 CHST9Q7L1S5 443 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 TMPRSS7Q7RTY8 843 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 SCML4Q8N228 414 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ZNF366Q8N895 744 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 CYB5D2Q8WUJ1 264 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 KCTD13Q8WZ19 329 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ARHGEF26Q96DR7 871 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 CCDC86Q9H6F5 360 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 FBRSQ9HAH7 460 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 LRRC4Q9HBW1 653 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 ADAM22Q9P0K1 906 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 CNOT8Q9UFF9 292 aaKnown RBP14.45□□□□□ -0.1
LDLR-213ENST00000560502 SFMBT1Q9UHJ3 866 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 BTBD3Q9Y2F9 522 aa14.45□□□□□ -0.1
LDLR-213ENST00000560502 COL5A1P20908 1838 aaPredicted RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 CTIFO43310 598 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 MSI1O43347 362 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 TSPAN3O60637 253 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 IGLV3-27P01718 113 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 PABPC1P11940 636 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 GRIA4P48058 902 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 CSNK1EP49674 416 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 RPS14P62263 151 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 ZBTB16Q05516 673 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 ACAP1Q15027 740 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 FNDC3BQ53EP0 1204 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 PLEKHA7Q6IQ23 1121 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 PEX26Q7Z412 305 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 DAAM2Q86T65 1068 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 AHI1Q8N157 1196 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 ZNF564Q8TBZ8 553 aaPredicted RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 WFDC5Q8TCV5 224 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 TFAP2BQ92481 460 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 EDEM1Q92611 657 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 LMLNQ96KR4 655 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 CDC6Q99741 560 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 ORAI3Q9BRQ5 295 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 NUP85Q9BW27 656 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 TLR10Q9BXR5 811 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 PRSS16Q9NQE7 514 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 ABCB8Q9NUT2 735 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 PARVAQ9NVD7 372 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 DKK4Q9UBT3 224 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 GGA2Q9UJY4 613 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 AMFRQ9UKV5 643 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 SNX11Q9Y5W9 270 aa14.44□□□□□ -0.1
LDLR-213ENST00000560502 URB1O60287 2271 aaKnown RBP14.44□□□□□ -0.1
LDLR-213ENST00000560502 EFCAB8A8MWE9 144 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 BUB1BO60566 1050 aaPredicted RBP14.43□□□□□ -0.1
LDLR-213ENST00000560502 GABBR2O75899 941 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 SEMA4FO95754 770 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 DLDP09622 509 aaKnown RBP14.43□□□□□ -0.1
LDLR-213ENST00000560502 SLC1A1P43005 524 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 DAOAP59103 153 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 PTP4A2Q12974 167 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 RPS6KA1Q15418 735 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 MPP7Q5T2T1 576 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 MBLAC2Q68D91 279 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 ZNF572Q7Z3I7 529 aaPredicted RBP14.43□□□□□ -0.1
LDLR-213ENST00000560502 NT5DC3Q86UY8 548 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 SIX6OS1Q8N1H7 587 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 MDM1Q8TC05 714 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 STK32AQ8WU08 396 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 RNF139Q8WU17 664 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 CPA5Q8WXQ8 436 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 SNX19Q92543 992 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 BIRC7Q96CA5 298 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 TMA16Q96EY4 203 aaKnown RBP14.43□□□□□ -0.1
LDLR-213ENST00000560502 MYO19Q96H55 970 aa14.43□□□□□ -0.1
LDLR-213ENST00000560502 PBKQ96KB5 322 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms