RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 IFI44Q8TCB0 444 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 TMC2Q8TDI7 906 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 EXTL1Q92935 676 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 KLHDC7BQ96G42 594 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 VRTNQ9H8Y1 702 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 USP29Q9HBJ7 922 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 PLCB1Q9NQ66 1216 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 CAPN11Q9UMQ6 739 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 DMTF1Q9Y222 760 aa9.61□□□□□ -0.87
SMAD3-215ENST00000560424 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.61□□□□□ -0.87
SMAD3-215ENST00000560424 COL12A1Q99715 3063 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 UNC79Q9P2D8 2635 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 AHCTF1Q8WYP5 2266 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 HHLA1C9JL84 531 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 IL1BP01584 269 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 ASLP04424 464 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 ITGB2P05107 769 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 KRT13P13646 458 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 C5AR1P21730 350 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 HNRNPH3P31942 346 aaKnown RBP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 AP3M2P53677 418 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SLC8A3P57103 927 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 YWHAGP61981 247 aaKnown RBP eCLIP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 CLN3Q13286 438 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SYCP1Q15431 976 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 HNRNPA1L2Q32P51 320 aaKnown RBP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SETMARQ53H47 684 aaPredicted RBP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SCD5Q86SK9 330 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 TMEM139Q8IV31 216 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 MFN1Q8IWA4 741 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 FAM217AQ8IXS0 508 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 CRYBG2Q8N1P7 616 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 ZSCAN1Q8NBB4 408 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 KIAA1524Q8TCG1 905 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 RNF139Q8WU17 664 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SGF29Q96ES7 293 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 ATXN7L3BQ96GX2 97 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 APOLD1Q96LR9 279 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 DNAJC7Q99615 494 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 DUSP23Q9BVJ7 150 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SDCBP2Q9H190 292 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 NUCKS1Q9H1E3 243 aaKnown RBP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 OLA1Q9NTK5 396 aaKnown RBP9.6□□□□□ -0.87
SMAD3-215ENST00000560424 TJP2Q9UDY2 1190 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 HMGXB4Q9UGU5 601 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 MYO6Q9UM54 1294 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 SSUH2Q9Y2M2 353 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 PCDHGA8Q9Y5G5 932 aa9.6□□□□□ -0.87
SMAD3-215ENST00000560424 USP9XQ93008 2570 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 EDDM13A0A1B0GTR0 161 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 TARSL2A2RTX5 802 aaKnown RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CPED1A4D0V7 1026 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 PRAMEF26H0Y7S4 382 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 LATO43561 262 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ZNF500O60304 480 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 TBL1XO60907 577 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 TNFSF15O95150 251 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 MOCS3O95396 460 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 FAM87AP0C7U9 286 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 THEGLP0DJG4 465 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CD70P32970 193 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 NNMTP40261 264 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 MLLT3P42568 568 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 VAMP7P51809 220 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 PPP2CBP62714 309 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 PPP2CAP67775 309 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ZBED6P86452 979 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CDK17Q00537 523 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 KCNMA1Q12791 1236 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 MEA1Q16626 185 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 SGSM1Q2NKQ1 1148 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 LINC00303Q3SY05 128 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 POM121L1PQ3SYA9 428 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ADGRF1Q5T601 910 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 DPY19L2P1Q6NXN4 242 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 RBM44Q6ZP01 1051 aaKnown RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CREBRFQ8IUR6 639 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 PIAS4Q8N2W9 510 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 SLC25A45Q8N413 288 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 OR8K1Q8NGG5 319 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 WDR36Q8NI36 951 aaKnown RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ZNF516Q92618 1163 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 SYN2Q92777 582 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ELMO3Q96BJ8 720 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 NT5C1AQ9BXI3 368 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CALN1Q9BXU9 219 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 IMPG2Q9BZV3 1241 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 SYNDIG1Q9H7V2 258 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ABHD10Q9NUJ1 306 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 UCKL1Q9NWZ5 548 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 NLGN3Q9NZ94 848 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 SEPT10Q9P0V9 454 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 STIM2Q9P246 746 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ATXN7L1Q9ULK2 861 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 LUC7L2Q9Y383 392 aaKnown RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 COQ4Q9Y3A0 265 aa9.59□□□□□ -0.87
SMAD3-215ENST00000560424 ARID1BQ8NFD5 2236 aaPredicted RBP9.59□□□□□ -0.87
SMAD3-215ENST00000560424 CDRT15L2A8MXV6 281 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms