RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 PSMD3O43242 534 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 DDHD2O94830 711 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 XRCC1P18887 633 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 TFEBP19484 476 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SULT1E1P49888 294 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 TTLL12Q14166 644 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 BNIPLQ7Z465 357 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 EFCAB3Q8N7B9 438 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 OR52K1Q8NGK4 314 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 OR6B3Q8NGW1 331 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 PPP1R14BQ96C90 147 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 VPS39Q96JC1 886 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 CATSPER2Q96P56 530 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SLC2A11Q9BYW1 496 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 ZCWPW1Q9H0M4 648 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 MRM3Q9HC36 420 aaKnown RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SEPT10Q9P0V9 454 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 STAP1Q9ULZ2 295 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 MFHAS1Q9Y4C4 1052 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 PLXNA1Q9UIW2 1896 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 PTPRFP10586 1907 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 UNCXA6NJT0 531 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 TRIM38O00635 465 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 GRID2O43424 1007 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 TSPAN1O60635 241 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 MPSTP25325 297 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 NOS2P35228 1153 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 GRIA4P48058 902 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 ZNF135P52742 658 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 MYBPC1Q00872 1141 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 NSUN2Q08J23 767 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 MAPRE2Q15555 327 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 IRAK1BP1Q5VVH5 260 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 ZNF772Q68DY9 489 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 KCNMB4Q86W47 210 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 BHLHE22Q8NFJ8 381 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 NT5C3BQ969T7 300 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 RCN3Q96D15 328 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 LRRC4Q9HBW1 653 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SETD4Q9NVD3 440 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SUCOQ9UBS9 1254 aaKnown RBP16.57■□□□□ 0.24
SHMT2-231ENST00000557433 AKT3Q9Y243 479 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 SQORQ9Y6N5 450 aa16.57■□□□□ 0.24
SHMT2-231ENST00000557433 ACOT8O14734 319 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 XPO1O14980 1071 aaKnown RBP16.56■□□□□ 0.24
SHMT2-231ENST00000557433 DCLK1O15075 740 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 PIGNO95427 931 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 CCDC166P0CW27 439 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 LCP1P13796 627 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 INSRRP14616 1297 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 PTPN3P26045 913 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 HCAR3P49019 387 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 CEACAM7Q14002 265 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 TTLL4Q14679 1199 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 UGP2Q16851 508 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 TBC1D25Q3MII6 688 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 KCTD11Q693B1 232 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 FAM131BQ86XD5 332 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 PYROXD2Q8N2H3 581 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 METTL25Q8N6Q8 603 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 DNAAF3Q8N9W5 541 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 CLEC4CQ8WTT0 213 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 STYXQ8WUJ0 223 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 NLRP7Q8WX94 980 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 ASB9Q96DX5 294 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 FAR2Q96K12 515 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 CNBD2Q96M20 576 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 RHOJQ9H4E5 214 aa16.56■□□□□ 0.24
SHMT2-231ENST00000557433 COPS7BQ9H9Q2 264 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-231ENST00000557433 EEF2KO00418 725 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 NPHS1O60500 1241 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 PSMC3P17980 439 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 KPNA2P52292 529 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 TXNL4AP83876 142 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 PPIDQ08752 370 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 TRAP1Q12931 704 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 SLC12A1Q13621 1099 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 ZBTB6Q15916 424 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 ARL13AQ5H913 290 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 CES3Q6UWW8 571 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 DEFB106AQ8N104 65 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 TMEM102Q8N9M5 508 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 ZFP28Q8NHY6 868 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 DUS3LQ96G46 650 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 TSPAN18Q96SJ8 248 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 OSBPL11Q9BXB4 747 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 C1QTNF1Q9BXJ1 281 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 SENP6Q9GZR1 1112 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 GBA3Q9H227 469 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 TASP1Q9H6P5 420 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 WDR55Q9H6Y2 383 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 C20orf96Q9NUD7 363 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 PIM2Q9P1W9 311 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 RALGAPA2Q2PPJ7 1873 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 F5H423 210 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 LTFP02788 710 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 C8BP07358 591 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 ENO3P13929 434 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 CYP2B6P20813 491 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms