RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 LIMK1P53667 647 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 RNASE9P60153 205 aaKnown RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 PITX1P78337 314 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 SLC6A3Q01959 620 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 NME3Q13232 169 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 PTPN20Q4JDL3 420 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 STPG1Q5TH74 334 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 RAP1GAP2Q684P5 730 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 C8orf74Q6P047 294 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 OLFML1Q6UWY5 402 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 SLC26A9Q7LBE3 791 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 HDXQ7Z353 690 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 ADIPOR2Q86V24 386 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 ERICH1Q86X53 443 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 CACUL1Q86Y37 369 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 ZDHHC17Q8IUH5 632 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 CFAP52Q8N1V2 620 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 FIBINQ8TAL6 211 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 WFDC5Q8TCV5 224 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 PRCCQ92733 491 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 SIPA1Q96FS4 1042 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 PRICKLE1Q96MT3 831 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 SLC2A13Q96QE2 648 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 LRRC1Q9BTT6 524 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 EDEM2Q9BV94 578 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 MKRN2Q9H000 416 aaKnown RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 CARD9Q9H257 536 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 GOLPH3Q9H4A6 298 aa12.8□□□□□ -0.36
SHMT2-214ENST00000554604 XPO7Q9UIA9 1087 aaKnown RBP12.8□□□□□ -0.36
SHMT2-214ENST00000554604 MUC22E2RYF6 1773 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 LNP1A1A4G5 178 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 KCNU1A8MYU2 1149 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 PATE3B3GLJ2 98 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 PGRMC1O00264 195 aaKnown RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 CEP104O60308 925 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 DAB1O75553 588 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 LSM8O95777 96 aaKnown RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 CYP1A1P04798 512 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 CFIP05156 583 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ITPKAP23677 461 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 NOS2P35228 1153 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ST8SIA6P61647 398 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ZNF33AQ06730 810 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 TRIM61Q5EBN2 209 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 CCNI2Q6ZMN8 369 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 KIAA0907Q7Z7F0 614 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 METTL3Q86U44 580 aaKnown RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ZNF366Q8N895 744 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ZNF653Q96CK0 615 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 C18orf8Q96DM3 657 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 HSPA12BQ96MM6 686 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 NUSAP1Q9BXS6 441 aaKnown RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 SMARCAL1Q9NZC9 954 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 STAP1Q9ULZ2 295 aa12.79□□□□□ -0.36
SHMT2-214ENST00000554604 ATXN2Q99700 1313 aaKnown RBP12.79□□□□□ -0.36
SHMT2-214ENST00000554604 DOCK4Q8N1I0 1966 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 MED19A0JLT2 244 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 PCNX2A6NKB5 2137 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 M0QYT0 321 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 SASH3O75995 380 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 LUC7L3O95232 432 aaKnown RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 ASLP04424 464 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CD6P30203 668 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 OXTRP30559 389 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CDH5P33151 784 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 HOXD12P35452 270 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CSKP41240 450 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 MATKP42679 507 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 DNA2P51530 1060 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 IRX4P78413 519 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CENPCQ03188 943 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 LMAN2Q12907 356 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 MTA1Q13330 715 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CAMK2GQ13555 558 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 PPM1JQ5JR12 505 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 RABGAP1LQ5R372 815 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 SYCP2LQ5T4T6 812 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 FAM102AQ5T9C2 384 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 TTC39BQ5VTQ0 682 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 SND1Q7KZF4 910 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 RABEPKQ7Z6M1 372 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 RGL4Q8IZJ4 473 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 ZNF564Q8TBZ8 553 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 FOXJ1Q92949 421 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 MYEOVQ96EZ4 313 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 TOE1Q96GM8 510 aaKnown RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 VCPIP1Q96JH7 1222 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 NUP85Q9BW27 656 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 TMEM245Q9H330 911 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 CD93Q9NPY3 652 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 TMEM9BQ9NQ34 198 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 ITM2CQ9NQX7 267 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 TMEM74BQ9NUR3 256 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 RRN3Q9NYV6 651 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 KIAA1522Q9P206 1035 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-214ENST00000554604 SUN2Q9UH99 717 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 PILRBQ9UKJ0 227 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 ALG6Q9Y672 507 aa12.78□□□□□ -0.36
SHMT2-214ENST00000554604 NYNRINQ9P2P1 1898 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms