RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 SH2D3CQ8N5H7 860 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 ATP11CQ8NB49 1132 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 TEKT4Q8WW24 435 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 MAGEH1Q9H213 219 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 LCMT1Q9UIC8 334 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 TFR2Q9UP52 801 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 EPN1Q9Y6I3 576 aaPredicted RBP23.35■■□□□ 1.33
TDP1-206ENST00000553569 WASH4PA8MWX3 477 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 H3BRJ5 948 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 IPO7O95373 1038 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 MT-CO1P00395 513 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 ACADMP11310 421 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 SRCP12931 536 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 BYSLQ13895 437 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 POLD3Q15054 466 aaPredicted RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 DPYSL2Q16555 572 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 C9orf64Q5T6V5 341 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 ALYREFQ86V81 257 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 ARHGEF2Q92974 986 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 HINFPQ9BQA5 517 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 NOL6Q9H6R4 1146 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 FBRSQ9HAH7 460 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 LUC7LQ9NQ29 371 aaKnown RBP23.34■■□□□ 1.33
TDP1-206ENST00000553569 HS3ST2Q9Y278 367 aa23.34■■□□□ 1.33
TDP1-206ENST00000553569 TARSL2A2RTX5 802 aaKnown RBP23.33■■□□□ 1.33
TDP1-206ENST00000553569 K7ERQ8 282 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ATP9BO43861 1147 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 BNIP3LO60238 219 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ZNF217O75362 1048 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 MTA2O94776 668 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 MAN1A1P33908 653 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ARL4AP40617 200 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 TAS2R40P59535 323 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ARF5P84085 180 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 KRT81Q14533 505 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 DLG2Q15700 870 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ZNF776Q68DI1 518 aaPredicted RBP23.33■■□□□ 1.33
TDP1-206ENST00000553569 Q6ZVU0 165 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 TMEM139Q8IV31 216 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 STK40Q8N2I9 435 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 FRS2Q8WU20 508 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 PTPRN2Q92932 1015 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 ACE2Q9BYF1 805 aaPredicted RBP23.33■■□□□ 1.33
TDP1-206ENST00000553569 KLHL11Q9NVR0 708 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 CWC15Q9P013 229 aaKnown RBP23.33■■□□□ 1.33
TDP1-206ENST00000553569 NCDNQ9UBB6 729 aa23.33■■□□□ 1.33
TDP1-206ENST00000553569 MBD1Q9UIS9 605 aaPredicted RBP23.33■■□□□ 1.33
TDP1-206ENST00000553569 THADAQ6YHU6 1953 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 VPS13AQ96RL7 3174 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 IGHV1OR15-9A0A0B4J2B8 117 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 RASA4BC9J798 803 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 MAP3K13O43283 966 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 RASA4O43374 803 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 ZMPSTE24O75844 475 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 ERCC2P18074 760 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 NOP2P46087 812 aaKnown RBP23.32■■□□□ 1.32
TDP1-206ENST00000553569 VASPP50552 380 aaPredicted RBP23.32■■□□□ 1.32
TDP1-206ENST00000553569 ZNF135P52742 658 aaPredicted RBP23.32■■□□□ 1.32
TDP1-206ENST00000553569 RPS14P62263 151 aaKnown RBP23.32■■□□□ 1.32
TDP1-206ENST00000553569 ELF2Q15723 593 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 PLK5Q496M5 336 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 LAIR1Q6GTX8 287 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 RETSATQ6NUM9 610 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 LEKR1Q6ZMV7 388 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 C11orf74Q86VG3 221 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 ACRBPQ8NEB7 543 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 HMCESQ96FZ2 354 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 CELF6Q96J87 481 aaKnown RBP23.32■■□□□ 1.32
TDP1-206ENST00000553569 PCDH18Q9HCL0 1135 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 GMEB2Q9UKD1 530 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 HPCAL4Q9UM19 191 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 ACTL7AQ9Y615 435 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 ABCA7Q8IZY2 2146 aa23.32■■□□□ 1.32
TDP1-206ENST00000553569 SMAD6O43541 496 aaKnown RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 RNASEH1O60930 286 aaKnown RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 DNTTP04053 509 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 ARHGAP25P42331 645 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 PSMD8P48556 350 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 SERPINH1P50454 418 aaKnown RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 CDH6P55285 790 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 DPYSQ14117 519 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 ATP13A4Q4VNC1 1196 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 ZFYVE27Q5T4F4 411 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 C22orf39Q6P5X5 142 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 MMAAQ8IVH4 418 aaKnown RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 DUSP15Q9H1R2 295 aaPredicted RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 RSPH9Q9H1X1 276 aaPredicted RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 DONSONQ9NYP3 566 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 USP36Q9P275 1121 aaKnown RBP23.31■■□□□ 1.32
TDP1-206ENST00000553569 MYO15AQ9UKN7 3530 aa23.31■■□□□ 1.32
TDP1-206ENST00000553569 HCAR3P49019 387 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 TPMTP51580 245 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 CLCN6P51797 869 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 YBEYP58557 167 aaPredicted RBP23.3■■□□□ 1.32
TDP1-206ENST00000553569 PARP15Q460N3 678 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 POLNQ7Z5Q5 900 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 FAM124AQ86V42 546 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 UMODL1-AS1Q8N2C9 162 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 NETO2Q8NC67 525 aa23.3■■□□□ 1.32
TDP1-206ENST00000553569 CSPG4P5Q96PW8 444 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms