RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 AKT3Q9Y243 479 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 PRSS51A0A1B0GVH4 220 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 SLCO1B7G3V0H7 640 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 HNRNPRO43390 633 aaKnown RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 MATKP42679 507 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 SULT1E1P49888 294 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 GMPSP49915 693 aaPredicted RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 PRKAA2P54646 552 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 NR1H2P55055 460 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 CSE1LP55060 971 aaKnown RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 APOFQ13790 326 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ADRM1Q16186 407 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ARL13AQ5H913 290 aaPredicted RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 SH3D19Q5HYK7 790 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ZYG11AQ6WRX3 759 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 TSNARE1Q96NA8 513 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 CATSPER2Q96P56 530 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 SENP6Q9GZR1 1112 aaPredicted RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 DPEP3Q9H4B8 488 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ZNF385DQ9H6B1 395 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 TASP1Q9H6P5 420 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 DDX18Q9NVP1 670 aaKnown RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 THEGQ9P2T0 379 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 HSFX1Q9UBD0 423 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 GRID2O43424 1007 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 TADA2AO75478 443 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 AP2A1O95782 977 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 CAPNS1P04632 268 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ACADSBP45954 432 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 TREML2Q5T2D2 321 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 NXNQ6DKJ4 435 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 KLC3Q6P597 504 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 BORAQ6PGQ7 559 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 STON2Q8WXE9 905 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 MOCOSQ96EN8 888 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 VPS39Q96JC1 886 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 MRPL1Q9BYD6 325 aaKnown RBP17.87■□□□□ 0.45
SYNE3-202ENST00000553340 ERAP1Q9NZ08 941 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 TLK1Q9UKI8 766 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 CITO14578 2027 aa17.87■□□□□ 0.45
SYNE3-202ENST00000553340 KCNK1O00180 336 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 CDKL1Q00532 357 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 RFTN1Q14699 578 aaPredicted RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 SLC25A52Q3SY17 297 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ZNF410Q86VK4 478 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 KCNMB4Q86W47 210 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ADAM32Q8TC27 787 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 COPS5Q92905 334 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 MFSD3Q96ES6 412 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ZBTB26Q9HCK0 441 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 PADI4Q9UM07 663 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ANKRD6Q9Y2G4 727 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 SCN1AP35498 2009 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 TK2O00142 265 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 SOCS7O14512 581 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 PPEF2O14830 753 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 CABYRO75952 493 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 FAM200BP0CF97 657 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 INSRRP14616 1297 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 RPL34P49207 117 aaKnown RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ATXN3P54252 364 aaPredicted RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 CREB5Q02930 508 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 PAFAH1B3Q15102 231 aaKnown RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ZNF484Q5JVG2 852 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 DEFB106AQ8N104 65 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 CNTD1Q8N815 330 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 IL22Q9GZX6 179 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 TIMMDC1Q9NPL8 285 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 ACSS2Q9NR19 701 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 C20orf96Q9NUD7 363 aaPredicted RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 EPS15L1Q9UBC2 864 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 CNOT11Q9UKZ1 510 aaKnown RBP17.86■□□□□ 0.45
SYNE3-202ENST00000553340 SLC39A10Q9ULF5 831 aa17.86■□□□□ 0.45
SYNE3-202ENST00000553340 HADHAP40939 763 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 DPP6P42658 865 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 NAGLUP54802 743 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 ANO4Q32M45 955 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 TMEM198Q66K66 360 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 FAM149B1Q96BN6 582 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 CASS4Q9NQ75 786 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 CIDEBQ9UHD4 219 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 ZDHHC2Q9UIJ5 367 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 MYOCOSA0A1B0GUC4 107 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 MAGEB16A2A368 324 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 STX16-NPEPL1H3BU86 382 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 TRPA1O75762 1119 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 VTNP04004 478 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 CCR10P46092 362 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 HPCAP84074 193 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 ITGA7Q13683 1181 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 PPP2R5DQ14738 602 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 ACVR1CQ8NER5 493 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 NLRP7Q8WX94 980 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 KLHL32Q96NJ5 620 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 IARS2Q9NSE4 1012 aaKnown RBP17.85■□□□□ 0.45
SYNE3-202ENST00000553340 HES2Q9Y543 173 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 A0A0G2JMZ2 1700 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 LRRC37A2A6NM11 1700 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 ACOT8O14734 319 aa17.85■□□□□ 0.45
SYNE3-202ENST00000553340 TSPAN1O60635 241 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms