RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PRAMEF2O60811 474 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 PAGE4O60829 102 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 TBX10O75333 385 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 NCR1O76036 304 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 CALRP27797 417 aaKnown RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 CAPZA2P47755 286 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 NRIP1P48552 1158 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 CLK3P49761 638 aaKnown RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 DIO1P49895 249 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 AGTR2P50052 363 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 GPC5P78333 572 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 GKAP1Q5VSY0 366 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 TCERG1LQ5VWI1 586 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 HMBOX1Q6NT76 420 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 CRELD2Q6UXH1 353 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 GET4Q7L5D6 327 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 DNAJB7Q7Z6W7 309 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 KIAA2013Q8IYS2 634 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 OR8H3Q8N146 312 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 GHDCQ8N2G8 530 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 C12orf76Q8N812 135 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 POGLUT1Q8NBL1 392 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 GPR150Q8NGU9 434 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 RP9Q8TA86 221 aaKnown RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 PTCD3Q96EY7 689 aaKnown RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 WDFY2Q96P53 400 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 HEMGNQ9BXL5 484 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 MRPL9Q9BYD2 267 aaKnown RBP6.12□□□□□ -1.43
SCFD1-208ENST00000553278 POLR1BQ9H9Y6 1135 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 SCPEP1Q9HB40 452 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 C20orf141Q9NUB4 165 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 BABAM1Q9NWV8 329 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 HDAC6Q9UBN7 1215 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 B3GNT3Q9Y2A9 372 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 PCDHGB5Q9Y5G0 923 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 CAPN7Q9Y6W3 813 aa6.12□□□□□ -1.43
SCFD1-208ENST00000553278 ADGRA2Q96PE1 1338 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 A0A1W2PRG0 241 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 GLOD5A6NK44 160 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SMTNL1A8MU46 457 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 A8MXE2 369 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 KCNJ18B7U540 433 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 CTDSP2O14595 271 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SUV39H1O43463 412 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 LIASO43766 372 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 ALDOCP09972 364 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 C1QTNF9P0C862 333 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 PRR35P0CG20 571 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 COMTP21964 271 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 DDX6P26196 483 aaKnown RBP eCLIP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 POU1F1P28069 291 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 CTGFP29279 349 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 HIBADHP31937 336 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 PPP5CP53041 499 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 CEBPZQ03701 1054 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 TFCP2Q12800 502 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 CSTF3Q12996 717 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 BMPR2Q13873 1038 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SF3B3Q15393 1217 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 CNGA3Q16281 694 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 KCNA10Q16322 511 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 TBC1D25Q3MII6 688 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 ERMARDQ5T6L9 678 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 MFSD6Q6ZSS7 791 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 Q6ZWC4 215 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 PARS2Q7L3T8 475 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 TMEM200AQ86VY9 491 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 THNSL1Q8IYQ7 743 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SYT2Q8N9I0 419 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 MSANTD4Q8NCY6 345 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SETD9Q8NE22 299 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 GOT1L1Q8NHS2 421 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 GSDMBQ8TAX9 411 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 C2CD4CQ8TF44 421 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 PGAP3Q96FM1 320 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 C1orf74Q96LT6 269 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SNX18Q96RF0 628 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 KLHL4Q9C0H6 718 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 KLC4Q9NSK0 619 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 NCKIPSDQ9NZQ3 722 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 KIAA1456Q9P272 454 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 SEL1LQ9UBV2 794 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 GTF3C4Q9UKN8 822 aa6.11□□□□□ -1.43
SCFD1-208ENST00000553278 INTS6Q9UL03 887 aaKnown RBP6.11□□□□□ -1.43
SCFD1-208ENST00000553278 BTBD18B2RXH4 712 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 TJP3O95049 919 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 NDUFA10O95299 355 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 IPO7O95373 1038 aaKnown RBP6.1□□□□□ -1.43
SCFD1-208ENST00000553278 GGPS1O95749 300 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 MBPP02686 304 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-208ENST00000553278 KRT1P04264 644 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 TGFB3P10600 412 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 IRF1P10914 325 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 SELLP14151 372 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 CD72P21854 359 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 BMPR1AP36894 532 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 THPOP40225 353 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 SLC15A1P46059 708 aa6.1□□□□□ -1.43
SCFD1-208ENST00000553278 ZNF41P51814 821 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-208ENST00000553278 RBP5P82980 135 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms