RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 WNT8BQ93098 351 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 NT5C3BQ969T7 300 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 CELF6Q96J87 481 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 RHOBTB2Q9BYZ6 727 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 ULBP1Q9BZM6 244 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 ZCWPW1Q9H0M4 648 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 STN1Q9H668 368 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 LRRC40Q9H9A6 602 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 LRRC4Q9HBW1 653 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 ADARB2Q9NS39 739 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 C20orf96Q9NUD7 363 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 RCOR3Q9P2K3 495 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 SLC39A10Q9ULF5 831 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 HUS1O60921 280 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 AP2A1O95782 977 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ATP5BP06576 529 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ARSAP15289 507 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SPRP35270 261 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ADRA1BP35368 520 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SCNN1AP37088 669 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 GRIA2P42262 883 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TAF6P49848 677 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 GSTA3Q16772 222 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CCDC153Q494R4 210 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 KCTD11Q693B1 232 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 FBXL19Q6PCT2 694 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 AAGABQ6PD74 315 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 OTOP3Q7RTS5 596 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 KCNMB4Q86W47 210 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SIX6OS1Q8N1H7 587 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 FBXW8Q8N3Y1 598 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 EDEM1Q92611 657 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CMTM5Q96DZ9 223 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 VPS39Q96JC1 886 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NR1H4Q96RI1 486 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 APBA2Q99767 749 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NAT9Q9BTE0 207 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 MED10Q9BTT4 135 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NMRAL1Q9HBL8 299 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 WDR6Q9NNW5 1121 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 VTA1Q9NP79 307 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CASS4Q9NQ75 786 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 GDAP2Q9NXN4 497 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 DNAJB4Q9UDY4 337 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 PCDHGB4Q9UN71 923 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SSX2IPQ9Y2D8 614 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 PCDHGB5Q9Y5G0 923 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 FNDC1Q4ZHG4 1894 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TXNDC9O14530 226 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TRIM13O60858 407 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 USP17L7P0C7H9 530 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SMIM10L2AP0DMW4 78 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SMIM10L2BP0DMW5 78 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CYP2C9P11712 490 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 DARSP14868 501 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ETS2P15036 469 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 PTPN1P18031 435 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CYP2B6P20813 491 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NUDT2P50583 147 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 MTTPP55157 894 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TPI1P60174 286 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NAB1Q13506 487 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 R3HDM1Q15032 1099 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 UBXN11Q5T124 520 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ARHGAP36Q6ZRI8 547 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SNX32Q86XE0 403 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TMEM151AQ8N4L1 468 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 PNPLA1Q8N8W4 532 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 GPRC5AQ8NFJ5 357 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 SPATA22Q8NHS9 363 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 PPP2R3CQ969Q6 453 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ISL2Q96A47 359 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 EMID1Q96A84 441 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 GBP5Q96PP8 586 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 HNRNPABQ99729 332 aaKnown RBP7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NUF2Q9BZD4 464 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 KLHL4Q9C0H6 718 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TASP1Q9H6P5 420 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 CRTAC1Q9NQ79 661 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 TCF7L2Q9NQB0 619 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 BFARQ9NZS9 450 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 NRCAMQ92823 1304 aa7.64□□□□□ -1.19
LIMA1-213ENST00000552720 ANKRD12Q6UB98 2062 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 RBM47A0AV96 593 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 CAPN8A6NHC0 703 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 TMEM233B4DJY2 109 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 STX16-NPEPL1H3BU86 382 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 DYNC1LI2O43237 492 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PIGNO95427 931 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 NCAM1P13591 858 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GLDCP23378 1020 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PIK3R1P27986 724 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 GABRB3P28472 473 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 NAGLUP54802 743 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PKNOX1P55347 436 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 INHBEP58166 350 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 PPIDQ08752 370 aaKnown RBP7.63□□□□□ -1.19
LIMA1-213ENST00000552720 SEMA3BQ13214 749 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 MPP3Q13368 585 aa7.63□□□□□ -1.19
LIMA1-213ENST00000552720 IRF5Q13568 498 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms