RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PCLAF	Q15004	111 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	HFE	Q30201	348 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SLC39A12	Q504Y0	691 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DCAF12L1	Q5VU92	463 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SLC25A24	Q6NUK1	477 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ZNF585A	Q6P3V2	769 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TMEM154	Q6P9G4	183 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ZCCHC12	Q6PEW1	402 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DPP8	Q6V1X1	898 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MARK2	Q7KZI7	788 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CHST9	Q7L1S5	443 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	RASGRP3	Q8IV61	690 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SIX6OS1	Q8N1H7	587 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	FBXW8	Q8N3Y1	598 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ZGPAT	Q8N5A5	531 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CCDC110	Q8TBZ0	833 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CCHCR1	Q8TD31	782 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DUSP19	Q8WTR2	217 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CASP10	Q92851	521 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CMTM3	Q96MX0	182 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CTAGE1	Q96RT6	745 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PIP5K1A	Q99755	562 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SH3GL2	Q99962	352 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	FAM129A	Q9BZQ8	928 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	NYX	Q9GZU5	481 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ISCU	Q9H1K1	167 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	KAT14	Q9H8E8	782 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CRLF2	Q9HC73	371 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ZNF304	Q9HCX3	659 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DDX4	Q9NQI0	724 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MBNL1	Q9NR56	388 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ABCB8	Q9NUT2	735 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CHCHD3	Q9NX63	227 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	EHD2	Q9NZN4	543 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DNAI1	Q9UI46	699 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TUBE1	Q9UJT0	475 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TBC1D30	Q9Y2I9	924 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MYBBP1A	Q9BQG0	1328 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	FRMD3	A2A2Y4	597 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	OR6C76	A6NM76	312 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	EFCAB8	A8MWE9	144 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	KIF2A	O00139	706 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	F2RL2	O00254	374 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PEX12	O00623	359 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	BCAT2	O15382	392 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MAGEB3	O15480	346 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PRPF4	O43172	522 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CA12	O43570	354 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PRAMEF4	O60810	478 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	RECQL5	O94762	991 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	EPN2	O95208	641 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	OR2C1	O95371	312 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	EIF2S1	P05198	315 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PRR35	P0CG20	571 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TPBGL	P0DKB5	382 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	GHR	P10912	638 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MCM3	P25205	808 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SOX6	P35712	828 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SREBF1	P36956	1147 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	LIG4	P49917	911 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MRPL12	P52815	198 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CASP9	P55211	416 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CDH8	P55286	799 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	KRT17	Q04695	432 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PPAT	Q06203	517 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TUBB2A	Q13885	445 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CLCA4	Q14CN2	919 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PDK1	Q15118	436 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	IMMT	Q16891	758 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MYLK3	Q32MK0	819 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	C19orf54	Q5BKX5	351 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CES4A	Q5XG92	561 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	GRAMD4	Q6IC98	578 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DGAT2L7P	Q6IED9	249 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ZYG11A	Q6WRX3	759 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CXXC5	Q7LFL8	322 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD53	Q8N9V6	530 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	RFWD2	Q8NHY2	731 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SPSB4	Q96A44	273 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	LMF1	Q96S06	567 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TACO1	Q9BSH4	297 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TUBB2B	Q9BVA1	445 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	PACSIN1	Q9BY11	444 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TRIM7	Q9C029	511 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SLC7A5P2	Q9GIP4	190 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	DPH5	Q9H2P9	285 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SEMA4B	Q9NPR2	832 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	TCP11L1	Q9NUJ3	509 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	ATAD3A	Q9NVI7	634 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	HMG20B	Q9P0W2	317 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	STK26	Q9P289	416 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	CNTN6	Q9UQ52	1028 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	MRPL11	Q9Y3B7	192 aa	Known RBP	4.37	□□□□□ -1.71
USP44-208	ENST00000552440	KDR	P35968	1356 aa		4.37	□□□□□ -1.71
USP44-208	ENST00000552440	SYCE3	A1L190	88 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CTDSP2	O14595	271 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	VEGFD	O43915	354 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	KLHL18	O94889	574 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TUBB	P07437	444 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 200.1 ms