RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 XKR9Q5GH70 373 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 COLEC12Q5KU26 742 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 CBWD5Q5RIA9 395 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 MTHFD1LQ6UB35 978 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 TMEM270Q6UE05 265 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 TMC5Q6UXY8 1006 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SYNE3Q6ZMZ3 975 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 ERN2Q76MJ5 926 aaKnown RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 UNC5CLQ8IV45 518 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SFRP1Q8N474 314 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 IL17RCQ8NAC3 791 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 HMGB4Q8WW32 186 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC13A3Q8WWT9 602 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 ALG3Q92685 438 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 RAB7BQ96AH8 199 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 GRAMD1AQ96CP6 724 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SAT2Q96F10 170 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 FAM81BQ96LP2 452 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 CFAP57Q96MR6 1250 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 DGAT2Q96PD7 388 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SORCS2Q96PQ0 1159 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC7A5P2Q9GIP4 190 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC32A1Q9H598 525 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 TTC12Q9H892 705 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 MMRN2Q9H8L6 949 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 UNKLQ9H9P5 680 aaKnown RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 PLEKHA2Q9HB19 425 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SCPEP1Q9HB40 452 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SIDT1Q9NXL6 827 aaKnown RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 SH3BP4Q9P0V3 963 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 STK26Q9P289 416 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 GULP1Q9UBP9 304 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 FTSJ1Q9UET6 329 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 KDRP35968 1356 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 RPTORQ8N122 1335 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 A0A0A6YYJ9 748 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 GAGE10A6NGK3 116 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 MYO1CO00159 1063 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 O00370 1275 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 POLR3GO15318 223 aaPredicted RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 SEC24DO94855 1032 aaPredicted RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 UNC5CO95185 931 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 CD1AP06126 327 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 WEE2P0C1S8 567 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TSPY4P0CV99 314 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TSPY10P0CW01 314 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TPH1P17752 444 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 ERCC2P18074 760 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 STAT2P52630 851 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 EIF3BP55884 814 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 WNT3P56703 355 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 WNT3AP56704 352 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TRA2BP62995 288 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 TUBB3Q13509 450 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 MROH9Q5TGP6 573 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 CENPPQ6IPU0 288 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 SARM1Q6SZW1 724 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 ZDHHC24Q6UX98 284 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 Q6ZVL8 140 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 PTCHD4Q6ZW05 846 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 MIER3Q7Z3K6 550 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 FAM83AQ86UY5 434 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 CDH26Q8IXH8 852 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 DCLK2Q8N568 766 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 LINC00482Q8N8I6 264 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 ATAD1Q8NBU5 361 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 PSMA8Q8TAA3 256 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TOE1Q96GM8 510 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 HIST1H2AHQ96KK5 128 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TCEANC2Q96MN5 208 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 HIST1H2AJQ99878 128 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TACO1Q9BSH4 297 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 SYT17Q9BSW7 474 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 HEMGNQ9BXL5 484 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 MS4A7Q9GZW8 240 aaPredicted RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 MAGEE1Q9HCI5 957 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 TRPV5Q9NQA5 729 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 SPATS2LQ9NUQ6 558 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 TMLHEQ9NVH6 421 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 CYP39A1Q9NYL5 469 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 OSGIN1Q9UJX0 560 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 INTS6Q9UL03 887 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 GRID1Q9ULK0 1009 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 KCNK7Q9Y2U2 307 aa6.51□□□□□ -1.37
VPS29-210ENST00000552130 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.51□□□□□ -1.37
VPS29-210ENST00000552130 PNMA6EA0A0J9YXQ4 647 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 LOC102723971A0A1B0GUV8 181 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 OR2W5A6NFC9 320 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 LRRIQ4A6NIV6 560 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 KIF28PB7ZC32 967 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 CTAGE5O15320 804 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 CD3EAPO15446 510 aaKnown RBP6.5□□□□□ -1.37
VPS29-210ENST00000552130 MTRF1O75570 445 aaKnown RBP6.5□□□□□ -1.37
VPS29-210ENST00000552130 RPP40O75818 363 aaKnown RBP6.5□□□□□ -1.37
VPS29-210ENST00000552130 RB1P06400 928 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 RHOXF2BP0C7M4 288 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 SKILP12757 684 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 KRT5P13647 590 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 PDGFRAP16234 1089 aa6.5□□□□□ -1.37
VPS29-210ENST00000552130 DDCP20711 480 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms