RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PSMC5P62195 406 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PPARDQ03181 441 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 HERC3Q15034 1050 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 UGCGQ16739 394 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 FAM187BQ17R55 369 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 RGS21Q2M5E4 152 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ZNF362Q5T0B9 420 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 AGAP7PQ5VUJ5 663 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 FAM160B1Q5W0V3 765 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 KIAA0907Q7Z7F0 614 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 CRLF3Q8IUI8 442 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 CENPSQ8N2Z9 138 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 RIN3Q8TB24 985 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 VCPIP1Q96JH7 1222 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 NSMCE3Q96MG7 304 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ALPK1Q96QP1 1244 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 UHRF1Q96T88 793 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 GCOM2Q9BZD3 368 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 FBXO6Q9NRD1 293 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 CHST7Q9NS84 486 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 DCTN4Q9UJW0 460 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 DSEQ9UL01 958 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 MYRFQ9Y2G1 1151 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 EVPLQ92817 2033 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 A0A0B4J269 797 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 LPXNO60711 386 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 SIN3BO75182 1162 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 SMIM10L2AP0DMW4 78 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 SMIM10L2BP0DMW5 78 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 COL6A2P12110 1019 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PSMC3P17980 439 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ABCB4P21439 1286 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ZNF76P36508 570 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 KCNJ1P48048 391 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 MYL7Q01449 175 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 TUBB3Q13509 450 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 OXA1LQ15070 435 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PHKG1Q16816 387 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 EPC2Q52LR7 807 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PRR16Q569H4 304 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 CCNJQ5T5M9 372 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 FAXCQ5TGI0 409 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 GPR153Q6NV75 609 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 TAF2Q6P1X5 1199 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 TTC23LQ6PF05 361 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ENOSF1Q7L5Y1 443 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PRPF39Q86UA1 669 aaKnown RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 ITIH5Q86UX2 942 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 SLC44A1Q8WWI5 657 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 TMA16Q96EY4 203 aaKnown RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 CYTH2Q99418 400 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 GDF15Q99988 308 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 HEPHQ9BQS7 1158 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 C1orf50Q9BV19 199 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 NUP85Q9BW27 656 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ANKRD60Q9BZ19 345 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 ADAMTS10Q9H324 1103 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 RC3H2Q9HBD1 1191 aaKnown RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 THAP1Q9NVV9 213 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 SELENONQ9NZV5 590 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 IPO11Q9UI26 975 aaKnown RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 APOBEC2Q9Y235 224 aaKnown RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 TSC22D4Q9Y3Q8 395 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 DENND4AQ7Z401 1863 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 MCF2LO15068 1137 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MAGEB3O15480 346 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CLDN3O15551 220 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 AQP9O43315 295 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 DNAJB5O75953 348 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 USP1O94782 785 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PAPLNO95428 1278 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 OXSR1O95747 527 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 ENO1P06733 434 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 DLATP10515 647 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 PABPC1P11940 636 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 ARL2P36404 184 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GSSP48637 474 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ENTPD1P49961 510 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 NLRP11P59045 1033 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 ZNF200P98182 395 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 CDC42EP1Q00587 391 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TSPY1Q01534 308 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GALNT2Q10471 571 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 NCOA4Q13772 614 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MESDQ14696 234 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 XKR3Q5GH77 459 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 LGSNQ5TDP6 509 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ACAD10Q6JQN1 1059 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C16orf89Q6UX73 402 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TIFABQ6ZNK6 161 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C1orf122Q6ZSJ8 110 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MIER3Q7Z3K6 550 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ADAT2Q7Z6V5 191 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 RHOT1Q8IXI2 618 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C4orf33Q8N1A6 199 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GOLM1Q8NBJ4 401 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TBC1D15Q8TC07 691 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 EPS8L1Q8TE68 723 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C9orf72Q96LT7 481 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PAFAH2Q99487 392 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms