RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-218	ENST00000540963	KAT5	Q92993	513 aa		27.57	■■■□□ 2
CHFR-218	ENST00000540963	ALG14	Q96F25	216 aa		27.57	■■■□□ 2
CHFR-218	ENST00000540963	CEP63	Q96MT8	703 aa		27.57	■■■□□ 2
CHFR-218	ENST00000540963	THAP9	Q9H5L6	903 aa		27.57	■■■□□ 2
CHFR-218	ENST00000540963	COL6A6	A6NMZ7	2263 aa		27.57	■■■□□ 2
CHFR-218	ENST00000540963	CKMT1A	P12532	417 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	RHD	Q02161	417 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	KCNH2	Q12809	1159 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	PCSK4	Q6UW60	755 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	TMEM110	Q86TL2	294 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	IFT43	Q96FT9	208 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	HIC2	Q96JB3	615 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	GDPD2	Q9HCC8	539 aa		27.56	■■■□□ 2
CHFR-218	ENST00000540963	TDRD6	O60522	2096 aa	Known RBP	27.56	■■■□□ 2
CHFR-218	ENST00000540963	GP1BA	P07359	652 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	ERVPABLB-1	P60509	514 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	KCNMA1	Q12791	1236 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	ACCSL	Q4AC99	568 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	BROX	Q5VW32	411 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	SPATA20	Q8TB22	786 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	FAM174A	Q8TBP5	190 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	DEPDC7	Q96QD5	511 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	FEM1A	Q9BSK4	669 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	USP29	Q9HBJ7	922 aa		27.55	■■■□□ 2
CHFR-218	ENST00000540963	TRIM49B	A6NDI0	452 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	MED7	O43513	233 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	THEGL	P0DJG4	465 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	ZNF18	P17022	549 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	CCR1	P32246	355 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	TMPRSS3	P57727	454 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	DLG2	Q15700	870 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	EVA1B	Q9NVM1	165 aa		27.54	■■■□□ 2
CHFR-218	ENST00000540963	OPA1	O60313	960 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	SMC2	O95347	1197 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	CALCA	P01258	141 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	ALPPL2	P10696	532 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	TAS2R38	P59533	333 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	RRAGA	Q7L523	313 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	SH2D3C	Q8N5H7	860 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	FARP1	Q9Y4F1	1045 aa	Predicted RBP	27.53	■■■□□ 2
CHFR-218	ENST00000540963	PCDHB1	Q9Y5F3	818 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963	OR51B4	Q9Y5P0	310 aa		27.53	■■■□□ 2
CHFR-218	ENST00000540963		E5RJQ4	531 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	PSMA7	O14818	248 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	LZTS3	O60299	673 aa	Predicted RBP	27.52	■■■□□ 2
CHFR-218	ENST00000540963	GLI1	P08151	1106 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	LSS	P48449	732 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	CDK17	Q00537	523 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	STIM1	Q13586	685 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	PIP5KL1	Q5T9C9	394 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	FBXL22	Q6P050	247 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963		Q6ZVU0	165 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	CIR1	Q86X95	450 aa	Predicted RBP	27.52	■■■□□ 2
CHFR-218	ENST00000540963	FAM181A	Q8N9Y4	354 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	DHTKD1	Q96HY7	919 aa	Predicted RBP	27.52	■■■□□ 2
CHFR-218	ENST00000540963	NLGN3	Q9NZ94	848 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	HS3ST2	Q9Y278	367 aa		27.52	■■■□□ 2
CHFR-218	ENST00000540963	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	NEMP2	A6NFY4	417 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963		J3QKU1	62 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	RIOK3	O14730	519 aa	Known RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	PIAS2	O75928	621 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	GIMD1	P0DJR0	217 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	AKT2	P31751	481 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	PPP1R2	P41236	205 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	DUSP3	P51452	185 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	ZNF177	Q13360	481 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	CCDC40	Q4G0X9	1142 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	TAF1B	Q53T94	588 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	DENND1B	Q6P3S1	775 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	FOXR2	Q6PJQ5	311 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	DCP2	Q8IU60	420 aa	Known RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	ARHGEF19	Q8IW93	802 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	FMR1NB	Q8N0W7	255 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	EHBP1	Q8NDI1	1231 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	RNF34	Q969K3	372 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	CCDC114	Q96M63	670 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	RPRD1A	Q96P16	312 aa	Predicted RBP	27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	DUSP23	Q9BVJ7	150 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	FAM204A	Q9H8W3	233 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	POLR1B	Q9H9Y6	1135 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	UCKL1	Q9NWZ5	548 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	CA5B	Q9Y2D0	317 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	TENM4	Q6N022	2769 aa		27.51	■■□□□ 1.99
CHFR-218	ENST00000540963	CLDN11	O75508	207 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	HNRNPA2B1	P22626	353 aa	Known RBP	27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	PITX1	P78337	314 aa	Predicted RBP	27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	IGF2-AS	Q6U949	168 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	HORMAD1	Q86X24	394 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	TMIE	Q8NEW7	156 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	SNRNP27	Q8WVK2	155 aa	Known RBP	27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	KREMEN1	Q96MU8	473 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	DPH1	Q9BZG8	443 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	ASNSD1	Q9NWL6	643 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	DDIT4	Q9NX09	232 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	VPS28	Q9UK41	221 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963	TBC1D30	Q9Y2I9	924 aa		27.5	■■□□□ 1.99
CHFR-218	ENST00000540963		A0A1W2PQU0	124 aa		27.49	■■□□□ 1.99
CHFR-218	ENST00000540963	SLC31A1	O15431	190 aa		27.49	■■□□□ 1.99
CHFR-218	ENST00000540963	GABRE	P78334	506 aa		27.49	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms