RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FATE1Q969F0 183 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 ZNF669Q96BR6 464 aaPredicted RBP14.05□□□□□ -0.16
RTN3-210ENST00000540798 KIFC1Q9BW19 673 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 STARD7Q9NQZ5 370 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 NDFIP2Q9NV92 336 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 DCDC2Q9UHG0 476 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 KRT16P08779 473 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 SELPP16109 830 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 GPR15P49685 360 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 CDK7P50613 346 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 LIMK2P53671 638 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 PIK3R6Q5UE93 754 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 OTOP3Q7RTS5 596 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 LRRC49Q8IUZ0 686 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 NUDCD3Q8IVD9 361 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 SCN4BQ8IWT1 228 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 SLC7A6OSQ96CW6 309 aaPredicted RBP14.05□□□□□ -0.16
RTN3-210ENST00000540798 CAPNS2Q96L46 248 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 CASD1Q96PB1 797 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 TMEM120AQ9BXJ8 343 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 IL1RAPL1Q9NZN1 696 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 DCTN4Q9UJW0 460 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 AAR2Q9Y312 384 aaKnown RBP14.05□□□□□ -0.16
RTN3-210ENST00000540798 PCDHB5Q9Y5E4 795 aa14.05□□□□□ -0.16
RTN3-210ENST00000540798 TANC1Q9C0D5 1861 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 DFFAO00273 331 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 PLIN3O60664 434 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 NBNO60934 754 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 ATP6V1G2O95670 118 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 INHAP05111 366 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 FGFR3P22607 806 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 ADRA1AP35348 466 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 ARFIP2P53365 341 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 USP46P62068 366 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 SNCBQ16143 134 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 TAF1BQ53T94 588 aaPredicted RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 C14orf80Q86SX3 495 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 MTDHQ86UE4 582 aaKnown RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 CRIPAKQ8N1N5 446 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 DNAAF3Q8N9W5 541 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 RAET1EQ8TD07 263 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.04□□□□□ -0.16
RTN3-210ENST00000540798 GLOD4Q9HC38 313 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 LNPEPQ9UIQ6 1025 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 OR6C75A6NL08 312 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 TBC1D4O60343 1298 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 CHI3L2Q15782 390 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 DDR2Q16832 855 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 HSF5Q4G112 596 aaPredicted RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 MBLAC2Q68D91 279 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 DENND5AQ6IQ26 1287 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 UTP4Q969X6 686 aaKnown RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 PPP1R2P1Q96PQ5 205 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 NOL6Q9H6R4 1146 aaKnown RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 PRDM5Q9NQX1 630 aaPredicted RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 MARCH5Q9NX47 278 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 ZFP69BQ9UJL9 534 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 PRG3Q9Y2Y8 225 aaPredicted RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 ENPP3O14638 875 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 HGSO14964 777 aaPredicted RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 TADA2AO75478 443 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 GRK4P32298 578 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 TUBP50607 506 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 CSE1LP55060 971 aaKnown RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 KIF2BQ8N4N8 673 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 MFSD3Q96ES6 412 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 SEZ6LQ9BYH1 1024 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 KCNK4Q9NYG8 393 aa14.04□□□□□ -0.16
RTN3-210ENST00000540798 PPARGC1AQ9UBK2 798 aaKnown RBP14.04□□□□□ -0.16
RTN3-210ENST00000540798 IGLV3-10A0A075B6K4 115 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 PEX11BO96011 259 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 PROCP04070 461 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 SLC2A3P11169 496 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 TARSP26639 723 aaKnown RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 TMPRSS15P98073 1019 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 N4BP2L1Q5TBK1 243 aaPredicted RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 SDHAF4Q5VUM1 108 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 ARMC3Q5W041 872 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 TIGD7Q6NT04 549 aaPredicted RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 UMODL1-AS1Q8N2C9 162 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.03□□□□□ -0.16
RTN3-210ENST00000540798 FAM193BQ96PV7 902 aaPredicted RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 C20orf27Q9GZN8 174 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 CHRAC1Q9NRG0 131 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 CREBZFQ9NS37 354 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 CLIC5Q9NZA1 410 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 NUDT5Q9UKK9 219 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 A0A0G2JND7 137 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 HNRNPCL1O60812 293 aaKnown RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 ANXA9O76027 345 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 VNN2O95498 520 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 FGF3P11487 239 aaPredicted RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 SPRP35270 261 aaPredicted RBP14.03□□□□□ -0.16
RTN3-210ENST00000540798 PCLAFQ15004 111 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 CLEC14AQ86T13 490 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 DCLK2Q8N568 766 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 OR6Y1Q8NGX8 325 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 AGAP2Q99490 1192 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 TBL1YQ9BQ87 522 aa14.03□□□□□ -0.16
RTN3-210ENST00000540798 TLE6Q9H808 572 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms