RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 L2HGDHQ9H9P8 463 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 PDFQ9HBH1 243 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 THAP10Q9P2Z0 257 aaPredicted RBP13.31□□□□□ -0.28
CCDC42-202ENST00000539522 VPS51Q9UID3 782 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 SLCO3A1Q9UIG8 710 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 CDC23Q9UJX2 597 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 SHROOM3Q8TF72 1996 aa13.31□□□□□ -0.28
CCDC42-202ENST00000539522 ZDBF2Q9HCK1 2354 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 hCG_1818297A0A087WSY0 165 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 A0A1W2PQF6 199 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 TYW5A2RUC4 315 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF487B1APH4 448 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 CHURC1-FNTBB4DL54 471 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 RASA4BC9J798 803 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 H3BRJ5 948 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 RNF103O00237 685 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ENC1O14682 589 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 RASA4O43374 803 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 SMAD6O43541 496 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 MAP3K6O95382 1288 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ATP1A1P05023 1023 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 TDGF1P13385 188 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 VAV1P15498 845 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 TCP1P17987 556 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 GBE1Q04446 702 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF211Q13398 564 aaPredicted RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 SLC12A1Q13621 1099 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 KRT81Q14533 505 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 C6orf118Q5T5N4 469 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 KIAA1211LQ6NV74 962 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 NPNTQ6UXI9 565 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 LINGO4Q6UY18 593 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF783Q6ZMS7 281 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 VSIG1Q86XK7 387 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF366Q8N895 744 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 EXD1Q8NHP7 514 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 WFIKKN2Q8TEU8 576 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 FRS2Q8WU20 508 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 RPL10LQ96L21 214 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 GABRG3Q99928 467 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 LRFN3Q9BTN0 628 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 MFSD1Q9H3U5 465 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 CATSPERBQ9H7T0 1116 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 CACNA2D2Q9NY47 1150 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 DDX56Q9NY93 547 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 SNX12Q9UMY4 172 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 ERVW-1Q9UQF0 538 aa13.3□□□□□ -0.28
CCDC42-202ENST00000539522 MRPS17Q9Y2R5 130 aaKnown RBP13.3□□□□□ -0.28
CCDC42-202ENST00000539522 TCRBV7S2A1N4TA0A589 114 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 CCDC66A2RUB6 948 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 PRR33A8MZF0 331 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 MIF4GDA9UHW6 222 aaKnown RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 J3KR12 359 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 RAMP2O60895 175 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 KLF8O95600 359 aaPredicted RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 DLDP09622 509 aaKnown RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 HLA-EP13747 358 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 PECAM1P16284 738 aaPredicted RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 AVPR2P30518 371 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 WASP42768 502 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 PAPOLAP51003 745 aaKnown RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF135P52742 658 aaPredicted RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 NDST2P52849 883 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 SATB1Q01826 763 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 SERINC3Q13530 473 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 DMC1Q14565 340 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 EIF4HQ15056 248 aaKnown RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 LEKR1Q6ZMV7 388 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 SYNPOQ8N3V7 929 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 ZNF513Q8N8E2 541 aaPredicted RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 DCAF4L2Q8NA75 395 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 TXNDC5Q8NBS9 432 aaKnown RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 ERLEC1Q96DZ1 483 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 PBKQ96KB5 322 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 NSMCE3Q96MG7 304 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 CIPCQ9C0C6 399 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 MAGEH1Q9H213 219 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 DTLQ9NZJ0 730 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 SAE1Q9UBE0 346 aaPredicted RBP13.29□□□□□ -0.28
CCDC42-202ENST00000539522 RNF14Q9UBS8 474 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 RAD54BQ9Y620 910 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 STON1Q9Y6Q2 735 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 CACNA1IQ9P0X4 2223 aa13.29□□□□□ -0.28
CCDC42-202ENST00000539522 VPS13AQ96RL7 3174 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 TTC34A8MYJ7 566 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 K7ESF4 209 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 STK25O00506 426 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 CES2O00748 559 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 KDELR3O43731 214 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 SRCP12931 536 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 PTPN7P35236 360 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 ARL4AP40617 200 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 VASPP50552 380 aaPredicted RBP13.28□□□□□ -0.28
CCDC42-202ENST00000539522 MRPS21P82921 87 aaKnown RBP13.28□□□□□ -0.28
CCDC42-202ENST00000539522 ECT2LQ008S8 904 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 DMWDQ09019 674 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 LRRC32Q14392 662 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 POLD3Q15054 466 aaPredicted RBP13.28□□□□□ -0.28
CCDC42-202ENST00000539522 WHAMMP3Q1A5X7 153 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 FBXO43Q4G163 708 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms