RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LDOC1O95751 146 aaPredicted RBP11.66□□□□□ -0.54
VPS28-214ENST00000531032 NOS2P35228 1153 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 GGCXP38435 758 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 ACADVLP49748 655 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 CDH4P55283 916 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 SNX16P57768 344 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 SLC6A3Q01959 620 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 CNTN1Q12860 1018 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 OVGP1Q12889 678 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 DLG2Q15700 870 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 SFMBT2Q5VUG0 894 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 OR6B2Q6IFH4 312 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 Q6ZVU0 165 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 KANSL1Q7Z3B3 1105 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 C14orf80Q86SX3 495 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 PRPF39Q86UA1 669 aaKnown RBP11.66□□□□□ -0.54
VPS28-214ENST00000531032 SLC47A2Q86VL8 602 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 SPATS2Q86XZ4 545 aaKnown RBP11.66□□□□□ -0.54
VPS28-214ENST00000531032 ZDHHC17Q8IUH5 632 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 CREBRFQ8IUR6 639 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 SH2D3CQ8N5H7 860 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 TSC1Q92574 1164 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 PIGVQ9NUD9 493 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 ARHGEF38Q9NXL2 777 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 RRN3Q9NYV6 651 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 CHMP5Q9NZZ3 219 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 VPS28Q9UK41 221 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 DMTF1Q9Y222 760 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 HS3ST2Q9Y278 367 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 DOCK9Q9BZ29 2069 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 A0A087WV48 116 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 I6L893 689 aaPredicted RBP11.65□□□□□ -0.54
VPS28-214ENST00000531032 M0QYT0 321 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 FOXN3O00409 490 aaPredicted RBP11.65□□□□□ -0.54
VPS28-214ENST00000531032 MAT2AP31153 395 aaKnown RBP11.65□□□□□ -0.54
VPS28-214ENST00000531032 CLCN1P35523 988 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 KRT9P35527 623 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 HNF1BP35680 557 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 CXCR3P49682 368 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 TAS2R38P59533 333 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 DNAJC3Q13217 504 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 ACCSLQ4AC99 568 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 BRMS1LQ5PSV4 323 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 FAM71AQ8IYT1 594 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 ZNF683Q8IZ20 524 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 EID2Q8N6I1 236 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 PIP4K2CQ8TBX8 421 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 HNRNPLLQ8WVV9 542 aaKnown RBP11.65□□□□□ -0.54
VPS28-214ENST00000531032 NT5C3BQ969T7 300 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 PGAP3Q96FM1 320 aaPredicted RBP11.65□□□□□ -0.54
VPS28-214ENST00000531032 PSMB7Q99436 277 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 NPY6RQ99463 290 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 PREBQ9HCU5 417 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 ANLNQ9NQW6 1124 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 DNAJC12Q9UKB3 198 aa11.65□□□□□ -0.54
VPS28-214ENST00000531032 URB1O60287 2271 aaKnown RBP11.65□□□□□ -0.55
VPS28-214ENST00000531032 KNTC1P50748 2209 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 ARID1BQ8NFD5 2236 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 PRAMEF26H0Y7S4 382 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MAGEC1O60732 1142 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 CNTN5O94779 1100 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 ADCY5O95622 1261 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MT-CO1P00395 513 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 CTSLP07711 333 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 PNMA6AP0CW24 399 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 SRCP12931 536 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 ZNF18P17022 549 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 TFE3P19532 575 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 CDH5P33151 784 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 SCNN1AP37088 669 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MTIF2P46199 727 aaKnown RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 UBE2HP62256 183 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 KRT83P78385 493 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 BNIP3Q12983 259 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 ILKQ13418 452 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 ACAP1Q15027 740 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 CAMK4Q16566 473 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MAN2A1Q16706 1144 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 POM121L1PQ3SYA9 428 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 SETMARQ53H47 684 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 ALFQ53S48 1182 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 PIP5KL1Q5T9C9 394 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 DPY19L2P1Q6NXN4 242 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 FBXL19Q6PCT2 694 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 SETD3Q86TU7 594 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 DCAF4L2Q8NA75 395 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MLKLQ8NB16 471 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 TMEM145Q8NBT3 493 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 OR2A12Q8NGT7 310 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 NXPE2Q96DL1 559 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 C2orf49Q9BVC5 232 aaPredicted RBP11.64□□□□□ -0.55
VPS28-214ENST00000531032 TKTL2Q9H0I9 626 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 SIK2Q9H0K1 926 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 MUC3BQ9H195 1237 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 WDCPQ9H6R7 721 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 SYNCQ9H7C4 482 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 PLCB1Q9NQ66 1216 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 TMEM51Q9NW97 253 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 VPS51Q9UID3 782 aa11.64□□□□□ -0.55
VPS28-214ENST00000531032 STAP1Q9ULZ2 295 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms