RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 LYL1P12980 280 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 COX7A2P14406 83 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CYP3A7P24462 503 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ABCD1P33897 745 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 BSGP35613 385 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 HADHAP40939 763 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CD151P48509 253 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CLK3P49761 638 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 NXPH1P58417 271 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 NLRP5P59047 1200 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 UFM1P61960 85 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 IFI35P80217 286 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 TXNL4AP83876 142 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 ARHGAP8P85298 464 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 TSPY1Q01534 308 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ITIH3Q06033 890 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ALKBH1Q13686 389 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 ERCC6LQ2NKX8 1250 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 DUSP28Q4G0W2 176 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CCDC92Q53HC0 331 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 TEDDM1Q5T9Z0 273 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 KAZNQ674X7 775 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 KIAA0895LQ68EN5 471 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 SLC30A6Q6NXT4 461 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 Q6ZWC4 215 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 PRIMA1Q86XR5 153 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 SIRT6Q8N6T7 355 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 NKAIN3Q8N8D7 197 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CCDC191Q8NCU4 936 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ACTRT2Q8TDY3 377 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 SCFD2Q8WU76 684 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 GLMPQ8WWB7 406 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CAVIN3Q969G5 261 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ITFG2Q969R8 447 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 NR1H4Q96RI1 486 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 EYA3Q99504 573 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 BAG1Q99933 345 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 MXD3Q9BW11 206 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CINPQ9BW66 212 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 TXLNGYQ9BZA5 131 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ALDH8A1Q9H2A2 487 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 KLC4Q9NSK0 619 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 RBM28Q9NW13 759 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 GIMAP2Q9UG22 337 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 CCNL1Q9UK58 526 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 CORO1CQ9ULV4 474 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 OSGIN2Q9Y236 505 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 COL11A2P13942 1736 aaPredicted RBP3.53□□□□□ -1.85
CD44-229ENST00000528672 PASKQ96RG2 1323 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 FAM170AA1A519 330 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 VGLL3A8MV65 326 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 CES2O00748 559 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 SYN3O14994 580 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 TMPRSS11DO60235 418 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 HMMRO75330 724 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 BEST1O76090 585 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 MTA2O94776 668 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 APOA4P06727 396 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 DLDP09622 509 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 CYP4B1P13584 511 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 MATN1P21941 496 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 ACSL1P33121 698 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 HNF1BP35680 557 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 PPARGP37231 505 aaPredicted RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 FOLR3P41439 243 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 CPA2P48052 419 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 CTCFP49711 727 aaPredicted RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 CLK1P49759 484 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 DIO1P49895 249 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 RPS6KA3P51812 740 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 MVDP53602 400 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 EIF3BP55884 814 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 RPL7AP62424 266 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 CCDC15Q0P6D6 951 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 EPS8Q12929 822 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 STK4Q13043 487 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 KRTAP15-1Q3LI76 137 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 TMEM119Q4V9L6 283 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 UBAP2Q5T6F2 1119 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 ZNF618Q5T7W0 954 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 TSTD2Q5T7W7 516 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 DENND2CQ68D51 928 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 TMEM88Q6PEY1 159 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 MTHFD1LQ6UB35 978 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 CYP20A1Q6UW02 462 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 KIRREL2Q6UWL6 708 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 RRM2BQ7LG56 351 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 SZRD1Q7Z422 152 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 MON1AQ86VX9 555 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 C17orf53Q8N3J3 647 aaPredicted RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 PNPLA1Q8N8W4 532 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 SRFBP1Q8NEF9 429 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 CNOT9Q92600 299 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 NELL1Q92832 810 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 CCDC47Q96A33 483 aaKnown RBP3.52□□□□□ -1.85
CD44-229ENST00000528672 RADILQ96JH8 1075 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 FAM210AQ96ND0 272 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.52□□□□□ -1.85
CD44-229ENST00000528672 HTATIP2Q9BUP3 242 aa3.52□□□□□ -1.85
CD44-229ENST00000528672 ELOVL1Q9BW60 279 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms