RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RPRD1AQ96P16 312 aaPredicted RBP24.23■■□□□ 1.47
CPSF1-202ENST00000527827 CPXM1Q96SM3 734 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 COX16Q9P0S2 106 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 HELZ2Q9BYK8 2649 aaKnown RBP24.22■■□□□ 1.47
CPSF1-202ENST00000527827 TDRD6O60522 2096 aaKnown RBP24.22■■□□□ 1.47
CPSF1-202ENST00000527827 BECN2A8MW95 431 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 GNA14O95837 355 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 GLI1P08151 1106 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 ACP1P24666 158 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 SETMARQ53H47 684 aaPredicted RBP24.22■■□□□ 1.47
CPSF1-202ENST00000527827 GJB7Q6PEY0 223 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 CACTIN-AS1Q8N1I8 211 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 RNF34Q969K3 372 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 ASNSD1Q9NWL6 643 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 VANGL2Q9ULK5 521 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 RAI2Q9Y5P3 530 aa24.22■■□□□ 1.47
CPSF1-202ENST00000527827 C1QTNF3-AMACRE9PGA6 284 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 PRAMEF26H0Y7S4 382 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 TRIM38O00635 465 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 GRAP2O75791 330 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 GGCXP38435 758 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 INSM1Q01101 510 aaPredicted RBP24.21■■□□□ 1.47
CPSF1-202ENST00000527827 LRRC69Q6ZNQ3 347 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 C14orf80Q86SX3 495 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 SLC25A45Q8N413 288 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 SH2D3CQ8N5H7 860 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 SNIP1Q8TAD8 396 aaKnown RBP24.21■■□□□ 1.47
CPSF1-202ENST00000527827 PPP1R9BQ96SB3 815 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 SRRTQ9BXP5 876 aaKnown RBP24.21■■□□□ 1.47
CPSF1-202ENST00000527827 PREBQ9HCU5 417 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 HS3ST4Q9Y661 456 aa24.21■■□□□ 1.47
CPSF1-202ENST00000527827 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP24.2■■□□□ 1.46
CPSF1-202ENST00000527827 SIGLEC6O43699 453 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 HSF2BPO75031 334 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 PRB1P04280 392 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 ZNF177Q13360 481 aaPredicted RBP24.2■■□□□ 1.46
CPSF1-202ENST00000527827 C5orf22Q49AR2 442 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 EFHC1Q5JVL4 640 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 PIP5KL1Q5T9C9 394 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 ENOSF1Q7L5Y1 443 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 TMEM145Q8NBT3 493 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 KLHDC7BQ96G42 594 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 PPP1R13BQ96KQ4 1090 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 VPS28Q9UK41 221 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 CLCA2Q9UQC9 943 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 TBC1D30Q9Y2I9 924 aa24.2■■□□□ 1.46
CPSF1-202ENST00000527827 BIN1O00499 593 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 RRP8O43159 456 aaKnown RBP24.19■■□□□ 1.46
CPSF1-202ENST00000527827 CTSLP07711 333 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 ZNF18P17022 549 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 GLDCP23378 1020 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 PAK1Q13153 545 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 ZNF211Q13398 564 aaPredicted RBP24.19■■□□□ 1.46
CPSF1-202ENST00000527827 TRIM65Q6PJ69 517 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 FAM183BPQ6ZVS7 135 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 DCBLD1Q8N8Z6 715 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 PSMB7Q99436 277 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 CRACR2AQ9BSW2 395 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 HS3ST2Q9Y278 367 aa24.19■■□□□ 1.46
CPSF1-202ENST00000527827 BNIP3LO60238 219 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 BRINP1O60477 761 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 RNGTTO60942 597 aaKnown RBP24.18■■□□□ 1.46
CPSF1-202ENST00000527827 PAGE1O75459 146 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 CLDN11O75508 207 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 MT-CO1P00395 513 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 SRCP12931 536 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 APBA1Q02410 837 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 NME3Q13232 169 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 OLFML1Q6UWY5 402 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 PASD1Q8IV76 773 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 BAP1Q92560 729 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 KLK6Q92876 244 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 FGF11Q92914 225 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 CAAP1Q9H8G2 361 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 UCKL1Q9NWZ5 548 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 PCDHGC3Q9UN70 934 aa24.18■■□□□ 1.46
CPSF1-202ENST00000527827 KALRNO60229 2985 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 RNF103O00237 685 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 ATXN7O15265 892 aaPredicted RBP24.17■■□□□ 1.46
CPSF1-202ENST00000527827 SLC31A1O15431 190 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 CNTN5O94779 1100 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 THEGLP0DJG4 465 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 PRLRP16471 622 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 SLC9A1P19634 815 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 DGKAP23743 735 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 USP8P40818 1118 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 CDH4P55283 916 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 MTA1Q13330 715 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 ARHGAP44Q17R89 818 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 OTUD1Q5VV17 481 aaPredicted RBP24.17■■□□□ 1.46
CPSF1-202ENST00000527827 C11orf57Q6ZUT1 292 aaPredicted RBP24.17■■□□□ 1.46
CPSF1-202ENST00000527827 SLC39A7Q92504 469 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 ARRDC3Q96B67 414 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 MYOCQ99972 504 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 ANLNQ9NQW6 1124 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 KLHL11Q9NVR0 708 aa24.17■■□□□ 1.46
CPSF1-202ENST00000527827 A0A1W2PQU0 124 aa24.16■■□□□ 1.46
CPSF1-202ENST00000527827 K7ERQ8 282 aa24.16■■□□□ 1.46
CPSF1-202ENST00000527827 TK2O00142 265 aa24.16■■□□□ 1.46
CPSF1-202ENST00000527827 SNAP91O60641 907 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms