RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	RPS6KA3	P51812	740 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	ACTR2	P61160	394 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	CUL4B	Q13620	913 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	THOC5	Q13769	683 aa	Known RBP	5.11	□□□□□ -1.59
CD44-223	ENST00000526553	LRRC24	Q50LG9	513 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	ANO1	Q5XXA6	986 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	AADACL2	Q6P093	401 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	LVRN	Q6Q4G3	990 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	PARM1	Q6UWI2	310 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	RNF144B	Q7Z419	303 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	VPS52	Q8N1B4	723 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	PELI3	Q8N2H9	469 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	CSGALNACT1	Q8TDX6	532 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	C2CD4C	Q8TF44	421 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	CCT6B	Q92526	530 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	TBC1D14	Q9P2M4	693 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	KL	Q9UEF7	1012 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	SLC4A4	Q9Y6R1	1079 aa		5.11	□□□□□ -1.59
CD44-223	ENST00000526553	NBN	O60934	754 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	CSF1	P09603	554 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	KLRC2	P26717	231 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	PGGT1B	P53609	377 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	P2RX3	P56373	397 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	PPAT	Q06203	517 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	FHL1	Q13642	323 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	DHX8	Q14562	1220 aa	Known RBP	5.1	□□□□□ -1.59
CD44-223	ENST00000526553	ADCK5	Q3MIX3	580 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	ODF3L2	Q3SX64	289 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553		Q5PR19	223 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	MOGAT3	Q86VF5	341 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	GPSM1	Q86YR5	675 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	DPP10	Q8N608	796 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	KDM1B	Q8NB78	822 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	SPATA5	Q8NB90	893 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	FAM167B	Q9BTA0	163 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	CADM1	Q9BY67	442 aa	Known RBP	5.1	□□□□□ -1.59
CD44-223	ENST00000526553	HIPK3	Q9H422	1215 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	RASSF1	Q9NS23	344 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	THAP1	Q9NVV9	213 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553	ZDHHC7	Q9NXF8	308 aa		5.1	□□□□□ -1.59
CD44-223	ENST00000526553		H0YGN5	161 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	SYN3	O14994	580 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	IRAK2	O43187	625 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	METTL18	O95568	372 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	DHRS4L1	P0CG22	281 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	SNHG28	P0DPA3	235 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	TNNT1	P13805	278 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	ARSA	P15289	507 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	PRKCH	P24723	683 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	AVPR2	P30518	371 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	HSP90AB4P	Q58FF6	505 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	RUNDC3A	Q59EK9	446 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	ZNF484	Q5JVG2	852 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	LCE1A	Q5T7P2	110 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	BRSK2	Q8IWQ3	736 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	SAMD14	Q8IZD0	417 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-223	ENST00000526553	HDAC7	Q8WUI4	952 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	INPP5D	Q92835	1189 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	ISCA1	Q9BUE6	129 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	HERC2P3	Q9BVR0	1158 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	CHODL	Q9H9P2	273 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	SIRT3	Q9NTG7	399 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-223	ENST00000526553	UPB1	Q9UBR1	384 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	OSGIN2	Q9Y236	505 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	DERA	Q9Y315	318 aa		5.09	□□□□□ -1.59
CD44-223	ENST00000526553	FAM90A8P	A6NJQ4	464 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	SAC3D1	A6NKF1	404 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	PROB1	E7EW31	1015 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	FAM90A13P	P0C7W8	464 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	FAM90A24P	P0C7X0	464 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	FCGR2A	P12318	317 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	MVD	P53602	400 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	ARL4C	P56559	192 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	PKP1	Q13835	747 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	RAPGEF1	Q13905	1077 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	ZNF549	Q6P9A3	640 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	ZNF517	Q6ZMY9	492 aa	Predicted RBP	5.08	□□□□□ -1.6
CD44-223	ENST00000526553	ZDHHC17	Q8IUH5	632 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	FTSJ3	Q8IY81	847 aa	Known RBP	5.08	□□□□□ -1.6
CD44-223	ENST00000526553	TMEM57	Q8N5G2	664 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	BICD2	Q8TD16	824 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	AFG1L	Q8WV93	481 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	IFT27	Q9BW83	186 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	B3GNT4	Q9C0J1	378 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
CD44-223	ENST00000526553	RBM38	Q9H0Z9	239 aa	Known RBP	5.08	□□□□□ -1.6
CD44-223	ENST00000526553	FEM1B	Q9UK73	627 aa		5.08	□□□□□ -1.6
CD44-223	ENST00000526553	MST1R	Q04912	1400 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	C17orf100	A8MU93	164 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	TMCC1	O94876	653 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	DDAH2	O95865	285 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	UNG	P13051	313 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	ITGB6	P18564	788 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	TNFSF8	P32971	234 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	EFR3A	Q14156	821 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	CTXN3	Q4LDR2	81 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	WASHC2D	Q5SRD0	308 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	CAMK1D	Q8IU85	385 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	C7orf57	Q8NEG2	295 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	CMAS	Q8NFW8	434 aa	Predicted RBP	5.07	□□□□□ -1.6

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