RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GRIA1P42261 906 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 GRIA4P48058 902 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 FCGRTP55899 365 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 RHOAP61586 193 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MRPS5P82675 430 aaKnown RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 RAP1GAP2Q684P5 730 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PACS1Q6VY07 963 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF572Q7Z3I7 529 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 LGI2Q8N0V4 545 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SLC44A1Q8WWI5 657 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 AZIN2Q96A70 460 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF184Q99676 751 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SIKE1Q9BRV8 207 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PDZD7Q9H5P4 517 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ATP13A1Q9HD20 1204 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CHRAC1Q9NRG0 131 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SNX15Q9NRS6 342 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 DDX18Q9NVP1 670 aaKnown RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SNX10Q9Y5X0 201 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ARFGEF2Q9Y6D5 1785 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MYH11P35749 1972 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 HEATR9A2RTY3 570 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 HACD1B0YJ81 288 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ABLIM1O14639 778 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MFSD11O43934 449 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 UGT1A9O60656 530 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MPOP05164 745 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 AKR1A1P14550 325 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 FMO4P31512 558 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 INPP1P49441 399 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PEX6Q13608 980 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 C9orf57Q5W0N0 161 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 VSTM1Q6UX27 236 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CCDC80Q76M96 950 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CCDC185Q8N715 623 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CCDC126Q96EE4 140 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 UGT1A7Q9HAW7 530 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 UGT1A10Q9HAW8 530 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 UGT1A8Q9HAW9 530 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SLC17A6Q9P2U8 582 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 TTLL13PA6NNM8 815 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 NT5C1B-RDH14C9J2C7 533 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CCL22O00626 93 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MRASO14807 208 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ALBP02768 609 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 C2P06681 752 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 TPBGLP0DKB5 382 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 RPL14P50914 215 aaKnown RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 RIPK1Q13546 671 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SNX17Q15036 470 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CCDC81Q6ZN84 652 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 OTOP3Q7RTS5 596 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 OR6Y1Q8NGX8 325 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SEMA4BQ9NPR2 832 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 XPR1Q9UBH6 696 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PCDHA11Q9Y5I1 949 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SPEF2Q9C093 1822 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MSCO60682 206 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ARIH2O95376 493 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ME2P23368 584 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SYTL3Q4VX76 610 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF280DQ6N043 979 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SLC44A2Q8IWA5 706 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 UNC5BQ8IZJ1 945 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PCDH19Q8TAB3 1148 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 OTULINQ96BN8 352 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CEP19Q96LK0 163 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MTG1Q9BT17 334 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 IL22Q9GZX6 179 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CLPBQ9H078 707 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SCUBE2Q9NQ36 999 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 MARCH2Q9P0N8 246 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 ANKRD12Q6UB98 2062 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PRR23AA6NEV1 266 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PGM3O95394 542 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 YWHAQP27348 245 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 ADRA1BP35368 520 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 GRM5P41594 1212 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 MAPK10P53779 464 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 OGDHQ02218 1023 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 BNIP1Q12981 228 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 FBXO48Q5FWF7 155 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PPP1R2P1Q96PQ5 205 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PRPF18Q99633 342 aaKnown RBP11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PHACTR1Q9C0D0 580 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 STARD7Q9NQZ5 370 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 TRPM5Q9NZQ8 1165 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 ZMYM5Q9UJ78 669 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PTPRJQ12913 1337 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 GRIN3BO60391 1043 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 RASSF9O75901 435 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 ATP6V1B2P21281 511 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 DMC1Q14565 340 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 ATP6AP1LQ52LC2 224 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 TBCELQ5QJ74 424 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 MYLPFQ96A32 169 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM79Q9BSE2 394 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF395Q9H8N7 513 aaPredicted RBP11.88□□□□□ -0.51
SYNPO-204ENST00000519664 RABGEF1Q9UJ41 708 aa11.88□□□□□ -0.51
SYNPO-204ENST00000519664 PCDHB5Q9Y5E4 795 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms